Factsheet for Os03t0604200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

plasma membrane: 18260611
extracellular: 24083427
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0147150-00
Os03t0425600-00
Os03t0604200-01
Os03t0757900-01
Os04t0581600-01
Os12t0443500-01
Os12t0443600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Os03t0147150-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0425600-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0604200-01	AT1G26570.1	21798944
AT5G39320.1	Os03t0757900-01	AT1G26570.1	21798944
AT5G39320.1	Os04t0581600-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443500-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443600-01	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	88.59	88.96
Zm00001d033188_P001	Maize	extracellular	87.97	88.15
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	87.76	87.94
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	87.34	87.53
Solyc02g088690.2.1	Tomato	nucleus	56.02	85.44
Os03t0757900-01	Rice	plasma membrane	84.85	85.21
Os12t0443500-01	Rice	plasma membrane	84.65	85.0
CDX74475	Canola	extracellular	45.23	84.5
Os12t0443600-01	Rice	extracellular	84.02	84.38
Os03t0425600-00	Rice	plasma membrane	84.02	84.2
KXG38049	Sorghum	endoplasmic reticulum, extracellular	87.14	84.17
Bra026264.1-P	Field mustard	extracellular, vacuole	42.95	83.81
AT5G15490.1	Thale cress	extracellular, vacuole	82.78	83.12
PGSC0003DMT400003666	Potato	extracellular, vacuole	82.78	82.95
CDY26425	Canola	extracellular, golgi	82.57	82.92
Bra008695.1-P	Field mustard	extracellular, golgi	82.16	82.5
Bra006303.1-P	Field mustard	extracellular, vacuole	81.95	82.29
KRH70872	Soybean	endoplasmic reticulum	81.95	82.29
PGSC0003DMT400087395	Potato	cytosol, golgi	81.54	81.88
AT3G29360.1	Thale cress	cytosol, vacuole	81.54	81.88
KRH75016	Soybean	endoplasmic reticulum	81.54	81.88
CDY37001	Canola	cytosol, vacuole	81.54	81.88
KRH01262	Soybean	nucleus	81.33	81.67
KRH18404	Soybean	endoplasmic reticulum	81.33	81.67
Bra028430.1-P	Field mustard	cytosol, vacuole	81.33	81.67
CDX67427	Canola	cytosol, vacuole	81.33	81.67
Bra028234.1-P	Field mustard	extracellular, vacuole	81.33	81.67
KRG93627	Soybean	endoplasmic reticulum	81.12	81.46
KRH44990	Soybean	nucleus	80.91	81.25
AT5G39320.1	Thale cress	extracellular	80.91	81.25
PGSC0003DMT400064713	Potato	cytosol	78.01	81.03
CDX69521	Canola	cytosol	61.83	80.76
Solyc03g115380.1.1	Tomato	nucleus, unclear	80.29	80.62
Solyc06g069550.1.1	Tomato	extracellular	78.63	78.96
PGSC0003DMT400083187	Potato	extracellular	78.22	78.54
Solyc02g067080.2.1	Tomato	extracellular	81.74	77.41
Bra024708.1-P	Field mustard	cytosol, extracellular	76.56	76.72
AT1G26570.1	Thale cress	cytosol, extracellular	76.56	76.72
CDY16166	Canola	cytosol	76.14	76.3
PGSC0003DMT400069038	Potato	cytosol	28.42	75.27
KRH56847	Soybean	cytosol	73.65	74.27
Bra025395.1-P	Field mustard	cytosol	14.52	73.68
KRH03109	Soybean	cytosol	73.03	73.49
CDX86369	Canola	cytosol	13.9	72.83
KRH15845	Soybean	cytosol	50.0	72.81
AT3G01010.1	Thale cress	cytosol	23.65	72.15
KRG89491	Soybean	cytosol	43.57	71.19
CDX90989	Canola	cytosol, golgi	80.91	71.17
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	82.16	70.84
CDX78633	Canola	cytosol	82.16	69.96
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	39.42	67.62
Bra023520.1-P	Field mustard	golgi	80.91	62.8
CDX85269	Canola	cytosol	27.8	60.91
CDX85549	Canola	cytosol	81.12	58.27
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	22.2	48.86
Bra030352.1-P	Field mustard	extracellular	6.64	44.44
CDY15951	Canola	extracellular	6.64	44.44
Os03t0147150-00	Rice	plasma membrane	17.84	35.25

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
EntrezGene:4333410	InterPro:6-PGluconate_DH-like_C_sf	ProteinID:AAT78767.1	ProteinID:ABF97514.1	EMBL:AK241939	UniProt:B7F958
ProteinID:BAF12545.2	ProteinID:BAS85214.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006024	GO:GO:0006065	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os03g0604200	EnsemblPlants:Os03t0604200-01	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721
PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SMART:SM00984	SUPFAM:SSF48179
SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf
InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI000188B021	RefSeq:XP_015629261.1	:

Description

UGD2Similar to UDP-glucose dehydrogenase. (Os03t0604200-01)

Coordinates

chr3:-:22641492..22657252

Molecular Weight (calculated)

53116.6 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.066

Length

482 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVV VVDISAPRIE GWNSERLPIY EPGLDDVVRQ CRGRNLFFST DVERHVADAG IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RIIADVSRSD KIVVEKSTVP VKTAEAIEKI LAHNSKGGNI RYQILSNPEF LAEGTAIQDL FSPDRVLIGG RETPEGRAAV AALKSIYARW
201: VPDDRIITTN LWSAELSKLA ANAFLAQRIS SVNAISALCE ATGADVTEVA NSIGKDSRIG PRFLSASVGF GGSCFQKDIL NLVYICECYG LPEVANYWHQ
301: VIRINDYQKS RFVNRVVSSM FNTVAGKKVA VLGFAFKKDT GDTRETPAID VCKGLVGDKA VVSIYDPQVT EEQVQRDLVM NKFDWDHPRH LQPMSPSSAK
401: HVAVSWDAYE AARGAHAVCI LTEWDEFRRL DYQRMYDAMH KPAFLFDGRN VVDPDKLRRI GFVVYSIGKP LDHWLRDMPA VA

Best Arabidopsis Sequence Match ( AT1G26570.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A

Arabidopsis Description

UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.