CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
golgi 4
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89491
KRH70872
KRH75016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	KRG89491	AT1G26570.1	21798944
AT5G39320.1	KRH70872	AT1G26570.1	21798944
AT5G39320.1	KRH75016	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93627	Soybean	endoplasmic reticulum	98.12	98.12
KRH44990	Soybean	nucleus	94.79	94.79
KRH01262	Soybean	nucleus	93.96	93.96
Solyc02g088690.2.1	Tomato	nucleus	60.62	92.09
AT3G29360.1	Thale cress	cytosol, vacuole	90.83	90.83
Zm00001d034072_P001	Maize	extracellular	90.62	90.62
KXG37519	Sorghum	cytosol, extracellular	90.62	90.62
Zm00001d013245_P001	Maize	plasma membrane	90.21	90.21
Bra026264.1-P	Field mustard	extracellular, vacuole	46.25	89.88
TraesCS4A01G199200.1	Wheat	extracellular, golgi	89.79	89.79
HORVU4Hr1G021270.1	Barley	extracellular, golgi	89.79	89.79
CDY26425	Canola	extracellular, golgi	89.79	89.79
TraesCS4B01G116200.1	Wheat	extracellular, golgi	89.58	89.58
TraesCS4D01G113800.1	Wheat	extracellular, golgi	89.58	89.58
CDX74475	Canola	extracellular	48.12	89.53
Bra008695.1-P	Field mustard	extracellular, golgi	89.38	89.38
GSMUA_Achr4P14320_001	Banana	cytosol	76.25	89.27
PGSC0003DMT400003666	Potato	extracellular, vacuole	89.38	89.19
AT5G39320.1	Thale cress	extracellular	88.96	88.96
AT5G15490.1	Thale cress	extracellular, vacuole	88.96	88.96
TraesCS5B01G399800.1	Wheat	unclear	88.96	88.96
Os03t0757900-01	Rice	plasma membrane	88.96	88.96
GSMUA_Achr4P03270_001	Banana	cytosol	69.79	88.86
Bra006303.1-P	Field mustard	extracellular, vacuole	88.75	88.75
TraesCS5D01G404300.1	Wheat	golgi	88.75	88.75
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	69.38	88.56
Os12t0443500-01	Rice	plasma membrane	88.54	88.54
Os12t0443600-01	Rice	extracellular	88.54	88.54
TraesCS5A01G394900.1	Wheat	extracellular, golgi	88.54	88.54
HORVU5Hr1G096370.1	Barley	extracellular, golgi	88.54	88.54
PGSC0003DMT400064713	Potato	cytosol	85.42	88.36
KRH75016	Soybean	endoplasmic reticulum	88.33	88.33
Bra028430.1-P	Field mustard	cytosol, vacuole	88.33	88.33
CDX67427	Canola	cytosol, vacuole	88.33	88.33
KRH70872	Soybean	endoplasmic reticulum	88.12	88.12
TraesCS4A01G264600.1	Wheat	extracellular	87.92	87.92
CDY37001	Canola	cytosol, vacuole	87.92	87.92
Bra028234.1-P	Field mustard	extracellular, vacuole	87.92	87.92
CDX69521	Canola	cytosol	67.5	87.8
TraesCS4D01G050600.2	Wheat	extracellular	87.71	87.71
EER95293	Sorghum	extracellular, vacuole	87.71	87.71
TraesCS4B01G050400.1	Wheat	extracellular	87.71	87.71
HORVU4Hr1G008270.1	Barley	extracellular, golgi	87.5	87.5
GSMUA_Achr3P30310_001	Banana	cytosol	68.96	87.34
GSMUA_Achr10P...	Banana	cytosol	67.92	86.7
GSMUA_Achr6P11090_001	Banana	cytosol	66.46	86.45
GSMUA_Achr11P...	Banana	cytosol	69.17	86.23
GSMUA_Achr6P23920_001	Banana	cytosol	57.92	85.02
Solyc02g067080.2.1	Tomato	extracellular	88.96	83.89
Os03t0425600-00	Rice	plasma membrane	83.96	83.78
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	62.71	83.61
PGSC0003DMT400069038	Potato	cytosol	31.67	83.52
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	82.5	82.33
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	82.29	82.29
Bra025395.1-P	Field mustard	cytosol	16.25	82.11
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	81.88	81.7
GSMUA_Achr7P26580_001	Banana	cytosol	22.08	81.54
Os03t0604200-01	Rice	plasma membrane	81.67	81.33
Zm00001d033188_P001	Maize	extracellular	80.83	80.67
CDX86369	Canola	cytosol	15.42	80.43
KRH03109	Soybean	cytosol	80.21	80.38
KRH56847	Soybean	cytosol	79.79	80.13
AT3G01010.1	Thale cress	cytosol	26.04	79.11
KRG89491	Soybean	cytosol	48.12	78.31
KRH15845	Soybean	cytosol	53.54	77.64
KXG38049	Sorghum	endoplasmic reticulum, extracellular	80.42	77.35
CDX90989	Canola	cytosol, golgi	87.29	76.46
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	88.75	76.21
CDX78633	Canola	cytosol	88.96	75.44
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.5	72.6
CDX85269	Canola	cytosol	31.88	69.55
Bra023520.1-P	Field mustard	golgi	87.29	67.47
CDX85549	Canola	cytosol	87.5	62.59
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	20.0	43.84
GSMUA_Achr4P10820_001	Banana	plasma membrane	66.46	42.93
Os03t0147150-00	Rice	plasma membrane	17.92	35.25

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	EntrezGene:100802280	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	EMBL:ACUP02008071	EnsemblPlantsGene:GLYMA_13G057700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006024	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:I1LWR5
EnsemblPlants:KRH18404	ProteinID:KRH18404	ProteinID:KRH18404.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720
PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	MetaCyc:PWY-7346
MetaCyc:PWY-7820	SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk
UniParc:UPI0001CAC158	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:15533358..15536680

Molecular Weight (calculated)

53062.7 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.106

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVA VVDISKSRIA AWNSDQLPIY EPGLDGVVKQ CRGKNLFFST DVEKHVYEAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNGKGIKF QILSNPEFLA EGTAIQDLFN PDRVLIGGRE TPEGQKAIQT LKDVYAHWVP
201: EGRILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVTQVSYA VGTDTRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVATKKIAIL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTED QIQRDLWMNK FDWDHPIHLQ PTSPTTEKKV
401: SVVWDAYEAT KDADGVCILT EWDEFKTLDY QKVYDNMRKP AFVFDGRNIV DVEKLRDIGF IVYSIGKPLD PWLKDMPAVA

Best Arabidopsis Sequence Match ( AT3G29360.2 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE TPEGFKAVQT LKNVYAHWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV
401: TVTWDAYEAT KDAHGICIMT EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA

Arabidopsis Description

UGD2UDP-glucose 6-dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA8]
SUBAcon: [vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.