Factsheet for GSMUA_Achr4P07270_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

cytosol 2
golgi 5
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P18750_001
GSMUA_Achr3P30310_001
GSMUA_Achr4P03270_001
GSMUA_Achr4P07270_001
GSMUA_Achr4P10820_001
GSMUA_Achr4P14320_001
GSMUA_Achr6P11090_001
GSMUA_Achr6P23920_001
GSMUA_Achr7P26580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	GSMUA_Achr10P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr11P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P18750_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P30310_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P03270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P07270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P10820_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P14320_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P11090_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P23920_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr7P26580_001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P26580_001	Banana	cytosol	31.38	90.77
GSMUA_Achr6P23920_001	Banana	cytosol	77.39	88.99
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	84.04	87.78
Bra025395.1-P	Field mustard	cytosol	19.95	78.95
CDX86369	Canola	cytosol	19.15	78.26
GSMUA_Achr4P03270_001	Banana	cytosol	78.46	78.25
GSMUA_Achr3P30310_001	Banana	cytosol	76.86	76.25
GSMUA_Achr6P11090_001	Banana	cytosol	72.61	73.98
GSMUA_Achr10P...	Banana	cytosol	73.14	73.14
GSMUA_Achr4P14320_001	Banana	cytosol	77.66	71.22
GSMUA_Achr11P...	Banana	cytosol	72.61	70.91
PGSC0003DMT400069038	Potato	cytosol	34.31	70.88
EER95293	Sorghum	extracellular, vacuole	90.43	70.83
KRG93627	Soybean	endoplasmic reticulum	88.83	69.58
Bra008695.1-P	Field mustard	extracellular, golgi	88.56	69.38
HORVU4Hr1G021270.1	Barley	extracellular, golgi	88.56	69.38
KRH18404	Soybean	endoplasmic reticulum	88.56	69.38
TraesCS4A01G199200.1	Wheat	extracellular, golgi	88.56	69.38
TraesCS4B01G116200.1	Wheat	extracellular, golgi	88.56	69.38
CDY26425	Canola	extracellular, golgi	88.3	69.17
TraesCS4D01G113800.1	Wheat	extracellular, golgi	88.3	69.17
Bra006303.1-P	Field mustard	extracellular, vacuole	88.03	68.96
KRH44990	Soybean	nucleus	87.77	68.75
AT5G15490.1	Thale cress	extracellular, vacuole	87.77	68.75
Os03t0425600-00	Rice	plasma membrane	87.5	68.4
KRH01262	Soybean	nucleus	87.23	68.33
PGSC0003DMT400087395	Potato	cytosol, golgi	86.97	68.12
PGSC0003DMT400003666	Potato	extracellular, vacuole	86.97	67.98
CDX67427	Canola	cytosol, vacuole	86.17	67.5
Bra028430.1-P	Field mustard	cytosol, vacuole	86.17	67.5
Solyc03g115380.1.1	Tomato	nucleus, unclear	86.17	67.5
CDY37001	Canola	cytosol, vacuole	86.17	67.5
AT3G29360.1	Thale cress	cytosol, vacuole	86.17	67.5
Solyc02g088690.2.1	Tomato	nucleus	56.65	67.41
Solyc06g069550.1.1	Tomato	extracellular	85.9	67.29
Bra028234.1-P	Field mustard	extracellular, vacuole	85.64	67.08
AT5G39320.1	Thale cress	extracellular	85.64	67.08
PGSC0003DMT400064713	Potato	cytosol	82.71	67.03
PGSC0003DMT400083187	Potato	extracellular	85.37	66.88
KRH70872	Soybean	endoplasmic reticulum	85.37	66.88
KRH75016	Soybean	endoplasmic reticulum	85.11	66.67
AT3G01010.1	Thale cress	cytosol	27.93	66.46
AT1G26570.1	Thale cress	cytosol, extracellular	82.98	64.86
Solyc02g067080.2.1	Tomato	extracellular	87.23	64.44
Bra024708.1-P	Field mustard	cytosol, extracellular	81.91	64.03
CDY16166	Canola	cytosol	81.65	63.83
KRH56847	Soybean	cytosol	79.26	62.34
CDX69521	Canola	cytosol	61.17	62.33
KRH03109	Soybean	cytosol	78.99	62.0
CDX74475	Canola	extracellular	41.22	60.08
Bra026264.1-P	Field mustard	extracellular, vacuole	39.1	59.51
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	88.3	59.39
CDX90989	Canola	cytosol, golgi	85.9	58.94
CDX78633	Canola	cytosol	88.3	58.66
KRG89491	Soybean	cytosol	44.41	56.61
CDX85269	Canola	cytosol	32.71	55.91
KRH15845	Soybean	cytosol	47.61	54.08
Bra030352.1-P	Field mustard	extracellular	10.11	52.78
CDY15951	Canola	extracellular	10.11	52.78
Bra023520.1-P	Field mustard	golgi	86.17	52.17
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	37.5	50.18
CDX85549	Canola	cytosol	86.17	48.29
GSMUA_Achr4P10820_001	Banana	plasma membrane	90.96	46.03

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	MapMan:3.13.3.1	Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf
GO:GO:0000166	GO:GO:0000271	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G07270_001	EnsemblPlants:GSMUA_Achr4P07270_001	EnsemblPlants:GSMUA_Achr4T07270_001	UniProt:M0SLU4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500134
PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_bac
UniParc:UPI0002956C17	:	:	:	:	:

Description

UDP-glucose 6-dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr4G07270_001]

Coordinates

chr4:-:5414944..5416389

Molecular Weight (calculated)

41097.5 Da

IEP (calculated)

5.323

GRAVY (calculated)

0.021

Length

376 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSIEVA VVDISVTRIA AWNSDQLPIY EPGLEDVVKQ CRGRNLFFST DVEEHVSEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSN KIILSNPEFL AEGTAIEDLF NPDRRISSVN AISALCEATG ANVAEVAFAV GKDTRIGPKF LNASVGFGGS CFQKDILNLV
201: YICECNGLPE VANYWKQVIK INDYQKSRFV NRVVSSMFNT IAGKKIAVLG FAFKKDTGDT RETPAIDVCK GLLGDKAKIS IYDPQPMSPT AVKEVSVTWD
301: AYEATRGAHG VCILTEWDEF RKLDYAKIYE NMQKPAFVFD GRNVVDPEKL REIGFMVYSI GKPLDPWLKD MPAVAA

Best Arabidopsis Sequence Match ( AT1G26570.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A

Arabidopsis Description

UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.