CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
golgi 4
extracellular 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75016	Soybean	endoplasmic reticulum	99.17	99.17
VIT_01s0011g00690.t01	Wine grape	cytosol, extracellular	90.21	90.21
TraesCS5B01G399800.1	Wheat	unclear	88.96	88.96
TraesCS5D01G404300.1	Wheat	golgi	88.75	88.75
HORVU5Hr1G096370.1	Barley	extracellular, golgi	88.75	88.75
TraesCS5A01G394900.1	Wheat	extracellular, golgi	88.54	88.54
TraesCS4A01G199200.1	Wheat	extracellular, golgi	88.54	88.54
KXG37519	Sorghum	cytosol, extracellular	88.54	88.54
KRH44990	Soybean	nucleus	88.54	88.54
KRG93627	Soybean	endoplasmic reticulum	88.54	88.54
HORVU4Hr1G021270.1	Barley	extracellular, golgi	88.54	88.54
Zm00001d034072_P001	Maize	extracellular	88.33	88.33
TraesCS4D01G113800.1	Wheat	extracellular, golgi	88.33	88.33
TraesCS4B01G116200.1	Wheat	extracellular, golgi	88.33	88.33
KRH18404	Soybean	endoplasmic reticulum	88.12	88.12
Os03t0757900-01	Rice	plasma membrane	88.12	88.12
KRH01262	Soybean	nucleus	88.12	88.12
Zm00001d013245_P001	Maize	plasma membrane	88.12	88.12
Os12t0443500-01	Rice	plasma membrane	87.92	87.92
EER95293	Sorghum	extracellular, vacuole	87.71	87.71
HORVU4Hr1G008270.1	Barley	extracellular, golgi	87.5	87.5
GSMUA_Achr4P14320_001	Banana	cytosol	74.58	87.32
TraesCS4B01G050400.1	Wheat	extracellular	87.29	87.29
Os12t0443600-01	Rice	extracellular	87.29	87.29
GSMUA_Achr4P03270_001	Banana	cytosol	68.54	87.27
TraesCS4D01G050600.2	Wheat	extracellular	87.08	87.08
TraesCS4A01G264600.1	Wheat	extracellular	87.08	87.08
GSMUA_Achr3P30310_001	Banana	cytosol	68.33	86.54
GSMUA_Achr6P11090_001	Banana	cytosol	66.25	86.18
GSMUA_Achr11P...	Banana	cytosol	68.96	85.97
GSMUA_Achr10P...	Banana	cytosol	67.29	85.9
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	66.88	85.37
AT1G26570.1	Thale cress	cytosol, extracellular	85.0	84.82
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	63.33	84.44
GSMUA_Achr6P23920_001	Banana	cytosol	57.5	84.4
GSMUA_Achr7P26580_001	Banana	cytosol	22.71	83.85
Os03t0425600-00	Rice	plasma membrane	83.33	83.16
Bra024708.1-P	Field mustard	cytosol, extracellular	83.33	83.16
CDY16166	Canola	cytosol	82.92	82.74
KRG89491	Soybean	cytosol	50.83	82.71
Os03t0604200-01	Rice	plasma membrane	82.29	81.95
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	81.46	81.29
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	81.25	81.25
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	81.04	80.87
Zm00001d033188_P001	Maize	extracellular	81.04	80.87
KRH03109	Soybean	cytosol	78.54	78.71
KRH56847	Soybean	cytosol	77.71	78.03
KXG38049	Sorghum	endoplasmic reticulum, extracellular	80.62	77.56
KRH15845	Soybean	cytosol	52.08	75.53
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	20.0	43.84
GSMUA_Achr4P10820_001	Banana	plasma membrane	65.21	42.13
Os03t0147150-00	Rice	plasma membrane	17.08	33.61

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	EntrezGene:100799142	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	EMBL:ACUP02000817	EnsemblPlantsGene:GLYMA_02G115400	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006024	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:I1JED0
EnsemblPlants:KRH70872	ProteinID:KRH70872	ProteinID:KRH70872.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720
PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	MetaCyc:PWY-7346
MetaCyc:PWY-7820	SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk
UniParc:UPI000233784C	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:11227609..11230080

Molecular Weight (calculated)

52877.6 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.057

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPEIEVV VVDIAAPRIN AWNSDHLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVAEAD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIERI LTHNRKGINF TILSNPEFLA EGTAIADLFK PDRVLIGGRE TPEGQKAIHS LKSVYAHWVP
201: EDRILCTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVSQVSHS IGTDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KVNDYQKMRF VNRVVSSMFN TVSGKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKAKL SIYDPQVTED QIMRDLAMKK FDWDHPAHLQ PLSPTSNKQV
401: SVVWDAYEAI KDAHGICVMT EWDEFKNLDY QKVYDSMQKP AFIFDGRNVV DVNKLREIGF IVYSIGKPLD SWLKDMPAVA

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.