Factsheet for Os12t0443500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
golgi 4
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0147150-00
Os03t0425600-00
Os03t0604200-01
Os03t0757900-01
Os04t0581600-01
Os12t0443500-01
Os12t0443600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Os03t0147150-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0425600-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0604200-01	AT1G26570.1	21798944
AT5G39320.1	Os03t0757900-01	AT1G26570.1	21798944
AT5G39320.1	Os04t0581600-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443500-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443600-01	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0757900-01	Rice	plasma membrane	97.5	97.5
Os12t0443600-01	Rice	extracellular	97.29	97.29
Zm00001d034072_P001	Maize	extracellular	95.42	95.42
KXG37519	Sorghum	cytosol, extracellular	95.0	95.0
Zm00001d013245_P001	Maize	plasma membrane	95.0	95.0
TraesCS5B01G399800.1	Wheat	unclear	94.79	94.79
TraesCS5D01G404300.1	Wheat	golgi	94.58	94.58
TraesCS5A01G394900.1	Wheat	extracellular, golgi	94.38	94.38
TraesCS4D01G050600.2	Wheat	extracellular	94.17	94.17
HORVU5Hr1G096370.1	Barley	extracellular, golgi	94.17	94.17
TraesCS4A01G264600.1	Wheat	extracellular	93.96	93.96
HORVU4Hr1G008270.1	Barley	extracellular, golgi	93.54	93.54
TraesCS4B01G050400.1	Wheat	extracellular	93.33	93.33
Solyc02g088690.2.1	Tomato	nucleus	60.42	91.77
KRH44990	Soybean	nucleus	89.79	89.79
PGSC0003DMT400003666	Potato	extracellular, vacuole	89.79	89.61
KRH01262	Soybean	nucleus	89.58	89.58
CDY26425	Canola	extracellular, golgi	89.38	89.38
Bra008695.1-P	Field mustard	extracellular, golgi	89.17	89.17
CDX69521	Canola	cytosol	68.54	89.16
PGSC0003DMT400064713	Potato	cytosol	85.62	88.58
Bra006303.1-P	Field mustard	extracellular, vacuole	88.54	88.54
KRH18404	Soybean	endoplasmic reticulum	88.54	88.54
AT5G15490.1	Thale cress	extracellular, vacuole	88.33	88.33
KRG93627	Soybean	endoplasmic reticulum	88.12	88.12
KRH70872	Soybean	endoplasmic reticulum	87.92	87.92
KRH75016	Soybean	endoplasmic reticulum	87.71	87.71
PGSC0003DMT400087395	Potato	cytosol, golgi	87.71	87.71
Bra028430.1-P	Field mustard	cytosol, vacuole	87.5	87.5
CDY37001	Canola	cytosol, vacuole	87.5	87.5
AT3G29360.1	Thale cress	cytosol, vacuole	87.5	87.5
CDX67427	Canola	cytosol, vacuole	87.5	87.5
Bra026264.1-P	Field mustard	extracellular, vacuole	44.79	87.04
Bra028234.1-P	Field mustard	extracellular, vacuole	86.88	86.88
Os03t0425600-00	Rice	plasma membrane	86.88	86.69
Solyc03g115380.1.1	Tomato	nucleus, unclear	86.67	86.67
AT5G39320.1	Thale cress	extracellular	86.67	86.67
CDX74475	Canola	extracellular	46.46	86.43
Solyc06g069550.1.1	Tomato	extracellular	85.83	85.83
PGSC0003DMT400083187	Potato	extracellular	85.21	85.21
Os03t0604200-01	Rice	plasma membrane	85.0	84.65
Solyc02g067080.2.1	Tomato	extracellular	89.17	84.09
PGSC0003DMT400069038	Potato	cytosol	31.88	84.07
AT1G26570.1	Thale cress	cytosol, extracellular	82.71	82.54
AT3G01010.1	Thale cress	cytosol	27.08	82.28
Bra024708.1-P	Field mustard	cytosol, extracellular	81.67	81.5
CDY16166	Canola	cytosol	81.25	81.08
Bra025395.1-P	Field mustard	cytosol	15.62	78.95
KRH03109	Soybean	cytosol	78.12	78.29
CDX86369	Canola	cytosol	15.0	78.26
KRH56847	Soybean	cytosol	77.71	78.03
KRG89491	Soybean	cytosol	47.5	77.29
KRH15845	Soybean	cytosol	53.12	77.04
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	88.75	76.21
CDX90989	Canola	cytosol, golgi	86.88	76.09
CDX78633	Canola	cytosol	88.75	75.27
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	42.92	73.31
Bra023520.1-P	Field mustard	golgi	87.08	67.31
CDX85269	Canola	cytosol	30.0	65.45
CDX85549	Canola	cytosol	87.29	62.44
Bra030352.1-P	Field mustard	extracellular	7.29	48.61
CDY15951	Canola	extracellular	7.29	48.61
Os04t0581600-01	Rice	cytosol, mitochondrion, peroxisome	21.25	46.58
Os03t0147150-00	Rice	plasma membrane	17.29	34.02

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
EntrezGene:4352146	InterPro:6-PGluconate_DH-like_C_sf	ProteinID:ABA97736.1	EMBL:AK104003	EMBL:AK105768	ProteinID:BAF29724.1
ProteinID:BAT16993.1	ProteinID:EEE53158.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006024	GO:GO:0006065	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os12g0443500	EnsemblPlants:Os12t0443500-01	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721
PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	UniProt:Q2QS14	SMART:SM00984
SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C
InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI00006812A1	RefSeq:XP_015620155.1

Description

UGD4Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH). (Os12t0443500-01)

Coordinates

chr12:+:14887908..14890425

Molecular Weight (calculated)

52857.5 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.066

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPAIEVV VVDISKPRID AWNSEQLPIY EPGLDEVVKE CRGRNLFFST DVEKHVAEAN IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPEGKKAVQA LKEVYAHWVP
201: EDRIITTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GANVAEVAYS VGKDSRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVANYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVSGKKIAVL GFAFKKDTGD TRETPAIDVC HGLLGDKAQI SIYDPQVTED QIQRDLAMSK FDWDHPMHLQ PTSPTAFKQV
401: SVVWDAYEAT KGAHGVCILT EWDEFKTLDY QKIFDNMQKP AFVFDGRNVV DAEKLREIGF IVYSIGKPLD AWLKDMPAVA

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.