CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
golgi 4
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95293
KXG37519
KXG38049

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	EER95293	AT1G26570.1	21798944
AT5G39320.1	KXG37519	AT1G26570.1	21798944
AT5G39320.1	KXG38049	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034072_P001	Maize	extracellular	99.17	99.17
Zm00001d013245_P001	Maize	plasma membrane	98.54	98.54
Os12t0443600-01	Rice	extracellular	95.42	95.42
Os03t0757900-01	Rice	plasma membrane	95.21	95.21
Os12t0443500-01	Rice	plasma membrane	95.0	95.0
TraesCS5B01G399800.1	Wheat	unclear	94.79	94.79
TraesCS5D01G404300.1	Wheat	golgi	94.58	94.58
HORVU5Hr1G096370.1	Barley	extracellular, golgi	94.58	94.58
TraesCS5A01G394900.1	Wheat	extracellular, golgi	94.38	94.38
Solyc02g088690.2.1	Tomato	nucleus	61.88	93.99
HORVU4Hr1G008270.1	Barley	extracellular, golgi	93.33	93.33
TraesCS4D01G050600.2	Wheat	extracellular	93.12	93.12
TraesCS4A01G264600.1	Wheat	extracellular	92.92	92.92
TraesCS4B01G050400.1	Wheat	extracellular	92.71	92.71
EER95293	Sorghum	extracellular, vacuole	92.29	92.29
CDY26425	Canola	extracellular, golgi	90.62	90.62
KRH18404	Soybean	endoplasmic reticulum	90.62	90.62
KRH44990	Soybean	nucleus	90.62	90.62
Bra008695.1-P	Field mustard	extracellular, golgi	90.62	90.62
PGSC0003DMT400003666	Potato	extracellular, vacuole	90.62	90.44
KRH01262	Soybean	nucleus	90.42	90.42
KRG93627	Soybean	endoplasmic reticulum	90.21	90.21
Bra006303.1-P	Field mustard	extracellular, vacuole	90.0	90.0
CDX69521	Canola	cytosol	69.17	89.97
AT5G15490.1	Thale cress	extracellular, vacuole	89.79	89.79
PGSC0003DMT400064713	Potato	cytosol	86.25	89.22
AT3G29360.1	Thale cress	cytosol, vacuole	89.17	89.17
KRH70872	Soybean	endoplasmic reticulum	88.54	88.54
KRH75016	Soybean	endoplasmic reticulum	88.33	88.33
PGSC0003DMT400087395	Potato	cytosol, golgi	88.33	88.33
Bra026264.1-P	Field mustard	extracellular, vacuole	45.21	87.85
CDY37001	Canola	cytosol, vacuole	87.5	87.5
CDX67427	Canola	cytosol, vacuole	87.5	87.5
Bra028430.1-P	Field mustard	cytosol, vacuole	87.5	87.5
VIT_14s0108g01590.t01	Wine grape	cytosol	14.38	87.34
AT5G39320.1	Thale cress	extracellular	87.29	87.29
CDX74475	Canola	extracellular	46.88	87.21
Solyc03g115380.1.1	Tomato	nucleus, unclear	87.08	87.08
Bra028234.1-P	Field mustard	extracellular, vacuole	86.88	86.88
Solyc06g069550.1.1	Tomato	extracellular	86.67	86.67
PGSC0003DMT400083187	Potato	extracellular	85.83	85.83
Solyc02g067080.2.1	Tomato	extracellular	89.79	84.68
PGSC0003DMT400069038	Potato	cytosol	31.67	83.52
AT1G26570.1	Thale cress	cytosol, extracellular	83.54	83.37
AT3G01010.1	Thale cress	cytosol	27.08	82.28
Bra025395.1-P	Field mustard	cytosol	16.25	82.11
Bra024708.1-P	Field mustard	cytosol, extracellular	81.88	81.7
CDX86369	Canola	cytosol	15.62	81.52
CDY16166	Canola	cytosol	81.46	81.29
KXG38049	Sorghum	endoplasmic reticulum, extracellular	83.54	80.36
KRH03109	Soybean	cytosol	79.38	79.54
KRH56847	Soybean	cytosol	78.96	79.29
KRG89491	Soybean	cytosol	47.5	77.29
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	90.0	77.28
CDX90989	Canola	cytosol, golgi	88.12	77.19
KRH15845	Soybean	cytosol	53.12	77.04
CDX78633	Canola	cytosol	90.21	76.5
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	43.12	73.67
CDX85269	Canola	cytosol	31.25	68.18
Bra023520.1-P	Field mustard	golgi	88.12	68.12
CDX85549	Canola	cytosol	88.33	63.19
Bra030352.1-P	Field mustard	extracellular	7.29	48.61
CDY15951	Canola	extracellular	7.29	48.61

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sf	UniProt:A0A1B6QHY1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	ProteinID:KXG37515.1	ProteinID:KXG37516.1	EnsemblPlants:KXG37519	ProteinID:KXG37519	ProteinID:KXG37519.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133
PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	MetaCyc:PWY-7346	MetaCyc:PWY-7820	SMART:SM00984	EnsemblPlantsGene:SORBI_3001G084100
SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C
InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI0001C80BE3	:

Description

hypothetical protein

Coordinates

chr1:-:6514183..6517115

Molecular Weight (calculated)

52895.6 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.081

Length

480 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPDIEVV VVDISKPRIE AWNSDTLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVAEAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSKSD KIVVEKSTVP VKTAEAIEKI LTHNSKGINY QILSNPEFLA EGTAIEDLFK PDRVLIGGRE TPEGRKAVQA LKDVYAHWVP
201: EDRILTTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GANVSEVAYA VGKDTRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAHYWKQVI
301: KINDYQKSRF VNRVVSSMFN TVAGKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTED QIQRDLAMNK FDWDHPMHLQ PTSPTAVKQV
401: SCVWDAYEAT KGAHGLCILT EWDEFKTLDY QKIFDNMQKP AFVFDGRNIV DPEKLREIGF IVYSIGKPLD AWLKDMPAVA

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.