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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
EER95293
KXG37519
KXG38049

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G39320.1 EER95293 AT1G26570.1 21798944
AT5G39320.1 KXG37519 AT1G26570.1 21798944
AT5G39320.1 KXG38049 AT1G26570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033188_P001 Maize extracellular 95.39 98.96
TraesCS4B01G077100.1 Wheat cytosol, vacuole 85.17 88.54
TraesCS4D01G075600.1 Wheat cytosol, vacuole 84.57 87.73
Os03t0604200-01 Rice plasma membrane 84.17 87.14
TraesCS4A01G237900.1 Wheat cytosol, vacuole 83.97 87.11
KXG37519 Sorghum cytosol, extracellular 80.36 83.54
Bra026264.1-P Field mustard extracellular, vacuole 41.28 83.4
Solyc02g088690.2.1 Tomato nucleus 52.51 82.91
CDX74475 Canola extracellular 42.69 82.56
EER95293 Sorghum extracellular, vacuole 78.76 81.88
CDY26425 Canola extracellular, golgi 78.36 81.46
Bra008695.1-P Field mustard extracellular, golgi 77.96 81.04
KRH01262 Soybean nucleus 77.96 81.04
KRH44990 Soybean nucleus 77.76 80.83
AT5G15490.1 Thale cress extracellular, vacuole 77.76 80.83
Bra006303.1-P Field mustard extracellular, vacuole 77.76 80.83
KRH70872 Soybean endoplasmic reticulum 77.56 80.62
PGSC0003DMT400087395 Potato cytosol, golgi 77.56 80.62
CDY37001 Canola cytosol, vacuole 77.56 80.62
CDX67427 Canola cytosol, vacuole 77.35 80.42
KRH75016 Soybean endoplasmic reticulum 77.35 80.42
KRH18404 Soybean endoplasmic reticulum 77.35 80.42
Bra028430.1-P Field mustard cytosol, vacuole 77.35 80.42
PGSC0003DMT400003666 Potato extracellular, vacuole 77.15 80.04
KRG93627 Soybean endoplasmic reticulum 76.95 80.0
AT3G29360.1 Thale cress cytosol, vacuole 76.95 80.0
Solyc03g115380.1.1 Tomato nucleus, unclear 76.75 79.79
Bra028234.1-P Field mustard extracellular, vacuole 76.75 79.79
AT5G39320.1 Thale cress extracellular 76.75 79.79
CDX69521 Canola cytosol 58.72 79.4
PGSC0003DMT400064713 Potato cytosol 73.75 79.31
PGSC0003DMT400083187 Potato extracellular 75.15 78.12
AT1G26570.1 Thale cress cytosol, extracellular 75.15 77.96
Solyc06g069550.1.1 Tomato extracellular 74.95 77.92
Bra024708.1-P Field mustard cytosol, extracellular 74.95 77.75
CDY16166 Canola cytosol 74.55 77.34
Solyc02g067080.2.1 Tomato extracellular 77.35 75.83
Bra025395.1-P Field mustard cytosol 14.23 74.74
CDX86369 Canola cytosol 13.63 73.91
AT3G01010.1 Thale cress cytosol 23.25 73.42
KRH56847 Soybean cytosol 69.14 72.18
KRH03109 Soybean cytosol 68.54 71.4
PGSC0003DMT400069038 Potato cytosol 25.85 70.88
KRG89491 Soybean cytosol 41.28 69.83
KRH15845 Soybean cytosol 46.29 69.79
CDX70614 Canola cytosol, mitochondrion, peroxisome, plastid 78.16 69.77
CDX90989 Canola cytosol, golgi 75.75 68.98
CDX78633 Canola cytosol 78.16 68.9
Solyc03g065350.1.1 Tomato cytosol, extracellular, peroxisome 38.48 68.33
Bra023520.1-P Field mustard golgi 75.75 60.87
CDX85269 Canola cytosol 26.45 60.0
CDX85549 Canola cytosol 75.95 56.48
CDY15951 Canola extracellular 6.41 44.44
Bra030352.1-P Field mustard extracellular 6.41 44.44
Protein Annotations
KEGG:00040+1.1.1.22KEGG:00053+1.1.1.22KEGG:00520+1.1.1.22Gene3D:1.20.5.100MapMan:3.13.3.1Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sfUniProt:A0A1B6QJH1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003979
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0005829GO:GO:0006024GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016491
GO:GO:0016616GO:GO:0051287GO:GO:0055114EnsemblPlants:KXG38049ProteinID:KXG38049ProteinID:KXG38049.1
InterPro:NAD(P)-bd_dom_sfPFAM:PF00984PFAM:PF03720PFAM:PF03721PIRSF:PIRSF000124PIRSF:PIRSF500133
PANTHER:PTHR11374PANTHER:PTHR11374:SF24MetaCyc:PWY-7346MetaCyc:PWY-7820SMART:SM00984EnsemblPlantsGene:SORBI_3001G171300
SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413unigene:Sbi.17615SignalP:SignalP-noTMTIGRFAMs:TIGR03026
InterPro:UDP-Glc/GDP-ManInterPro:UDP-Glc/GDP-Man_DH_CInterPro:UDP-Glc/GDP-Man_DH_C_sfInterPro:UDP-Glc/GDP-Man_DH_NInterPro:UDP-Glc/GDP-Man_DH_dimerInterPro:UDPglc_DH_euk
UniParc:UPI00081AEB06:::::
Description
hypothetical protein
Coordinates
chr1:+:14314212..14315949
Molecular Weight (calculated)
54642.9 Da
IEP (calculated)
6.425
GRAVY (calculated)
0.078
Length
499 amino acids
Sequence
(BLAST)
001: MKITVFLLVL VDCADRVTMV KICCIGAGYV GGPTMAVIAL KCPAIEVVVV DISEPRIAGW NSERLPIYEP GLDDVVKQCR GRNLFFSTEV HRHVGDADIV
101: FVSVNTPTKT CGLGAGKAAD LTYWESAARM IADVSRSDKI VVEKSTVPVK TAEAIEKILV HNSRGVRYQI LSNPEFLAEG TAVQDLFAPD RVLIGGRETP
201: EGRAAVAKLR DVYAQWVPGD RIITTNLWSA ELSKLAANAF LAQRISSVNA ISALCEATGA DITEVAHSVG RDARIGPRFL SASVGFGGSC FQKDILNLVY
301: ICECYGLPEV AAYWREVIRI NDHQKSRFVK CVVSSMFNTV AGKKIAVLGF AFKKDTGDTR ETPAIDVCNG LLGDKAVISI YDPQVTGEQV SRDLAMNKFD
401: WDHPRHLQPL SATDLAKQVA VAPDAYEAAR DAHAVCILTE WDEFRTLDYK RMFDAMHKPA FIFDGRNVVD PAKLREIGFV VYAIGKPLDD WLKDMPAVA
Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
Arabidopsis Description
UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.