Factsheet for Zm00001d033188_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 20408568
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013245_P001
Zm00001d033188_P001
Zm00001d034072_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Zm00001d013245_P001	AT1G26570.1	21798944
AT5G39320.1	Zm00001d033188_P001	AT1G26570.1	21798944
AT5G39320.1	Zm00001d034072_P001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38049	Sorghum	endoplasmic reticulum, extracellular	98.96	95.39
TraesCS4B01G077100.1	Wheat	cytosol, vacuole	88.77	88.96
TraesCS4D01G075600.1	Wheat	cytosol, vacuole	88.15	88.15
Os03t0604200-01	Rice	plasma membrane	88.15	87.97
TraesCS4A01G237900.1	Wheat	cytosol, vacuole	87.53	87.53
Zm00001d013245_P001	Maize	plasma membrane	84.2	84.38
Zm00001d034072_P001	Maize	extracellular	83.99	84.17
Solyc02g088690.2.1	Tomato	nucleus	54.89	83.54
Bra026264.1-P	Field mustard	extracellular, vacuole	42.62	83.0
CDX74475	Canola	extracellular	44.28	82.56
CDY26425	Canola	extracellular, golgi	81.7	81.88
Bra008695.1-P	Field mustard	extracellular, golgi	81.29	81.46
KRH01262	Soybean	nucleus	81.29	81.46
KRH44990	Soybean	nucleus	81.08	81.25
AT5G15490.1	Thale cress	extracellular, vacuole	81.08	81.25
Bra006303.1-P	Field mustard	extracellular, vacuole	81.08	81.25
KRH70872	Soybean	endoplasmic reticulum	80.87	81.04
PGSC0003DMT400087395	Potato	cytosol, golgi	80.87	81.04
CDY37001	Canola	cytosol, vacuole	80.87	81.04
CDX67427	Canola	cytosol, vacuole	80.67	80.83
KRH75016	Soybean	endoplasmic reticulum	80.67	80.83
KRH18404	Soybean	endoplasmic reticulum	80.67	80.83
Bra028430.1-P	Field mustard	cytosol, vacuole	80.67	80.83
PGSC0003DMT400003666	Potato	extracellular, vacuole	80.46	80.46
AT3G29360.1	Thale cress	cytosol, vacuole	80.25	80.42
KRG93627	Soybean	endoplasmic reticulum	80.25	80.42
CDX69521	Canola	cytosol	61.54	80.22
Solyc03g115380.1.1	Tomato	nucleus, unclear	80.04	80.21
AT5G39320.1	Thale cress	extracellular	80.04	80.21
Bra028234.1-P	Field mustard	extracellular, vacuole	80.04	80.21
PGSC0003DMT400064713	Potato	cytosol	76.92	79.74
PGSC0003DMT400083187	Potato	extracellular	78.59	78.75
AT1G26570.1	Thale cress	cytosol, extracellular	78.38	78.38
Solyc06g069550.1.1	Tomato	extracellular	78.17	78.33
Bra024708.1-P	Field mustard	cytosol, extracellular	78.17	78.17
CDY16166	Canola	cytosol	77.75	77.75
Solyc02g067080.2.1	Tomato	extracellular	80.67	76.23
Bra025395.1-P	Field mustard	cytosol	14.55	73.68
AT3G01010.1	Thale cress	cytosol	24.12	73.42
CDX86369	Canola	cytosol	13.93	72.83
PGSC0003DMT400069038	Potato	cytosol	27.44	72.53
KRH56847	Soybean	cytosol	71.73	72.18
KRH03109	Soybean	cytosol	71.31	71.61
KRG89491	Soybean	cytosol	43.45	70.85
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	81.29	69.95
KRH15845	Soybean	cytosol	47.82	69.49
CDX90989	Canola	cytosol, golgi	79.0	69.34
CDX78633	Canola	cytosol	81.29	69.08
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	39.92	68.33
Bra023520.1-P	Field mustard	golgi	79.0	61.19
CDX85269	Canola	cytosol	27.03	59.09
CDX85549	Canola	cytosol	79.21	56.78
CDY15951	Canola	extracellular	6.65	44.44
Bra030352.1-P	Field mustard	extracellular	6.65	44.44

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	EntrezGene:100285497	MapMan:3.13.3.1
Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf	UniProt:B6U5L3	EMBL:EU972528	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003979	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM06931.1	PFAM:PF00984
PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30
SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man
InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI000182F818
EnsemblPlantsGene:Zm00001d033188	EnsemblPlants:Zm00001d033188_P001	EnsemblPlants:Zm00001d033188_T001	:	:	:

Description

UDP-glucose 6-dehydrogenase

Coordinates

chr1:-:253276754..253278199

Molecular Weight (calculated)

52705.3 Da

IEP (calculated)

6.427

GRAVY (calculated)

0.012

Length

481 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPAIEVV VVDISEPRIA GWNSERLPIY EPGLDDVVRQ CRGRNLFFST EVHRHVGDAD IVFVSVNTPT KTCGLGAGKA
101: ADLTYWESAA RMIADVSRSD KIVVEKSTVP VKTAEAIEKI LVHNSRGVRY QILSNPEFLA EGTAVQDLFA PDRVLIGGRE TPEGRAAVAR LRDVYAQWVP
201: GDRIITTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GADVTEVAHS VGRDARIGPR FLSASVGFGG SCFQKDILNL VYICECYGLP EVAAYWREVI
301: RINDHQKSRF VNRVVSSMFN TVAGKKIAVL GFAFKKDTGD TRETPAIDVC NGLLGDKAVI SIYDPQVTGE QVSRDLAMNK FDWDHPRHLQ PLSATDLAKQ
401: VAVAPDAYEA ARDAHAVCIL TEWDEFRTLD YKRMFDAMHK PAFIFDGRNV VDPAKLREIG FVVYAIGKPL DDWLKDMPAV A

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.