Subcellular Localization
min:
: max
Winner_takes_all: vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G075600.1 | Wheat | cytosol, vacuole | 98.12 | 97.92 |
| TraesCS4A01G237900.1 | Wheat | cytosol, vacuole | 96.67 | 96.47 |
| Zm00001d033188_P001 | Maize | extracellular | 88.96 | 88.77 |
| Os03t0604200-01 | Rice | plasma membrane | 88.96 | 88.59 |
| Solyc02g088690.2.1 | Tomato | nucleus | 56.67 | 86.08 |
| KXG38049 | Sorghum | endoplasmic reticulum, extracellular | 88.54 | 85.17 |
| Bra026264.1-P | Field mustard | extracellular, vacuole | 43.12 | 83.81 |
| CDX74475 | Canola | extracellular | 45.0 | 83.72 |
| TraesCS5B01G399800.1 | Wheat | unclear | 83.54 | 83.54 |
| TraesCS4B01G050400.1 | Wheat | extracellular | 82.71 | 82.71 |
| CDY26425 | Canola | extracellular, golgi | 82.71 | 82.71 |
| TraesCS4B01G116200.1 | Wheat | extracellular, golgi | 82.29 | 82.29 |
| KRH18404 | Soybean | endoplasmic reticulum | 82.29 | 82.29 |
| Bra008695.1-P | Field mustard | extracellular, golgi | 82.29 | 82.29 |
| KRH01262 | Soybean | nucleus | 82.08 | 82.08 |
| Bra006303.1-P | Field mustard | extracellular, vacuole | 82.08 | 82.08 |
| AT5G15490.1 | Thale cress | extracellular, vacuole | 82.08 | 82.08 |
| PGSC0003DMT400003666 | Potato | extracellular, vacuole | 82.08 | 81.91 |
| KRH44990 | Soybean | nucleus | 81.88 | 81.88 |
| KRG93627 | Soybean | endoplasmic reticulum | 81.67 | 81.67 |
| AT3G29360.1 | Thale cress | cytosol, vacuole | 81.67 | 81.67 |
| PGSC0003DMT400087395 | Potato | cytosol, golgi | 81.46 | 81.46 |
| KRH70872 | Soybean | endoplasmic reticulum | 81.25 | 81.25 |
| Solyc03g115380.1.1 | Tomato | nucleus, unclear | 81.04 | 81.04 |
| KRH75016 | Soybean | endoplasmic reticulum | 81.04 | 81.04 |
| CDY37001 | Canola | cytosol, vacuole | 80.83 | 80.83 |
| AT5G39320.1 | Thale cress | extracellular | 80.83 | 80.83 |
| CDX69521 | Canola | cytosol | 62.08 | 80.76 |
| CDX67427 | Canola | cytosol, vacuole | 80.62 | 80.62 |
| Bra028430.1-P | Field mustard | cytosol, vacuole | 80.62 | 80.62 |
| PGSC0003DMT400064713 | Potato | cytosol | 77.71 | 80.39 |
| Bra028234.1-P | Field mustard | extracellular, vacuole | 80.21 | 80.21 |
| PGSC0003DMT400083187 | Potato | extracellular | 78.75 | 78.75 |
| Solyc06g069550.1.1 | Tomato | extracellular | 78.54 | 78.54 |
| AT1G26570.1 | Thale cress | cytosol, extracellular | 77.71 | 77.55 |
| Bra024708.1-P | Field mustard | cytosol, extracellular | 77.5 | 77.34 |
| Solyc02g067080.2.1 | Tomato | extracellular | 81.67 | 77.01 |
| CDY16166 | Canola | cytosol | 77.08 | 76.92 |
| PGSC0003DMT400069038 | Potato | cytosol | 28.12 | 74.18 |
| KRH03109 | Soybean | cytosol | 73.12 | 73.28 |
| Bra025395.1-P | Field mustard | cytosol | 14.38 | 72.63 |
| KRH56847 | Soybean | cytosol | 72.29 | 72.59 |
| CDX86369 | Canola | cytosol | 13.75 | 71.74 |
| KRH15845 | Soybean | cytosol | 49.17 | 71.3 |
| AT3G01010.1 | Thale cress | cytosol | 23.33 | 70.89 |
| CDX70614 | Canola | cytosol, mitochondrion, peroxisome, plastid | 82.29 | 70.66 |
| CDX90989 | Canola | cytosol, golgi | 80.21 | 70.26 |
| KRG89491 | Soybean | cytosol | 43.12 | 70.17 |
| CDX78633 | Canola | cytosol | 82.29 | 69.79 |
| Solyc03g065350.1.1 | Tomato | cytosol, extracellular, peroxisome | 39.38 | 67.26 |
| Bra023520.1-P | Field mustard | golgi | 80.21 | 62.0 |
| CDX85269 | Canola | cytosol | 26.88 | 58.64 |
| CDX85549 | Canola | cytosol | 80.42 | 57.53 |
| CDY15951 | Canola | extracellular | 7.08 | 47.22 |
| Bra030352.1-P | Field mustard | extracellular | 7.08 | 47.22 |
Protein Annotations
| KEGG:00040+1.1.1.22 | KEGG:00053+1.1.1.22 | KEGG:00520+1.1.1.22 | Gene3D:1.20.5.100 | MapMan:3.13.3.1 | Gene3D:3.40.50.720 |
| InterPro:6-PGluconate_DH-like_C_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003979 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016616 | GO:GO:0051287 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00984 | PFAM:PF03720 | PFAM:PF03721 | PIRSF:PIRSF000124 | PIRSF:PIRSF500133 | PANTHER:PTHR11374 |
| PANTHER:PTHR11374:SF30 | SMART:SM00984 | SUPFAM:SSF48179 | SUPFAM:SSF51735 | SUPFAM:SSF52413 | TIGRFAMs:TIGR03026 |
| EnsemblPlantsGene:TraesCS4B01G077100 | EnsemblPlants:TraesCS4B01G077100.1 | InterPro:UDP-Glc/GDP-Man | InterPro:UDP-Glc/GDP-Man_DH_C | InterPro:UDP-Glc/GDP-Man_DH_C_sf | InterPro:UDP-Glc/GDP-Man_DH_N |
| InterPro:UDP-Glc/GDP-Man_DH_dimer | InterPro:UDPglc_DH_euk | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:73608423..73610157
Molecular Weight (calculated)
52957.4 Da
IEP (calculated)
5.067
GRAVY (calculated)
-0.061
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPDMEVV VVDISEARIA GWNSERLPIY EPGLDDVVKQ CRGRNLFFST DVERYVGEAD VVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSRSD KIVVEKSTVP VKTAEAIEKI LAHNSRGVRY QILSNPEFLA EGTAVRDLFA PDRVLIGGRE TPEGQAAVKV LKDVYARWVP
201: EDRIITTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GADVTEVAYS IGKDSRIGPR FLSASVGFGG SCFQKDILNL VYICECYGLP EVADYWRQVI
301: GINDYQKSRF VNRVVSSMFN TVAGKKVAVL GFAFKKDTGD TRETPAIDVC RGLLGDKAVV SIYDPQVTEE QVRRDLAMNK FDWDHPRHLQ PVGEPADQPV
401: AVTSDAYEAA RDAHAVCILT EWEEFRNLDY GRMYDIMQKP AFVFDGRNIV DPEKLRDIGF IVYAIGKPLD QWLRDMPAVA
101: ADLTYWESAA RMIADVSRSD KIVVEKSTVP VKTAEAIEKI LAHNSRGVRY QILSNPEFLA EGTAVRDLFA PDRVLIGGRE TPEGQAAVKV LKDVYARWVP
201: EDRIITTNLW SAELSKLAAN AFLAQRISSV NAISALCEAT GADVTEVAYS IGKDSRIGPR FLSASVGFGG SCFQKDILNL VYICECYGLP EVADYWRQVI
301: GINDYQKSRF VNRVVSSMFN TVAGKKVAVL GFAFKKDTGD TRETPAIDVC RGLLGDKAVV SIYDPQVTEE QVRRDLAMNK FDWDHPRHLQ PVGEPADQPV
401: AVTSDAYEAA RDAHAVCILT EWEEFRNLDY GRMYDIMQKP AFVFDGRNIV DPEKLRDIGF IVYAIGKPLD QWLRDMPAVA
001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A
Arabidopsis Description
UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.