Factsheet for Os04t0581600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 2
golgi 1
peroxisome 1
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0147150-00
Os03t0425600-00
Os03t0604200-01
Os03t0757900-01
Os04t0581600-01
Os12t0443500-01
Os12t0443600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	Os03t0147150-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0425600-00	AT1G26570.1	21798944
AT5G39320.1	Os03t0604200-01	AT1G26570.1	21798944
AT5G39320.1	Os03t0757900-01	AT1G26570.1	21798944
AT5G39320.1	Os04t0581600-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443500-01	AT1G26570.1	21798944
AT5G39320.1	Os12t0443600-01	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026264.1-P	Field mustard	extracellular, vacuole	37.9	33.6
CDX74475	Canola	extracellular	38.36	32.56
Solyc02g088690.2.1	Tomato	nucleus	42.01	29.11
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	32.88	25.62
Os03t0604200-01	Rice	plasma membrane	48.86	22.2
CDX69521	Canola	cytosol	36.53	21.68
Os03t0757900-01	Rice	plasma membrane	47.03	21.46
Os12t0443500-01	Rice	plasma membrane	46.58	21.25
Os12t0443600-01	Rice	extracellular	46.58	21.25
Os03t0425600-00	Rice	plasma membrane	46.12	21.0
PGSC0003DMT400064713	Potato	cytosol	44.29	20.91
Bra024708.1-P	Field mustard	cytosol, extracellular	45.66	20.79
PGSC0003DMT400087395	Potato	cytosol, golgi	45.21	20.62
AT5G15490.1	Thale cress	extracellular, vacuole	45.21	20.62
CDY26425	Canola	extracellular, golgi	45.21	20.62
CDY16166	Canola	cytosol	45.21	20.58
Solyc06g069550.1.1	Tomato	extracellular	44.75	20.42
PGSC0003DMT400083187	Potato	extracellular	44.75	20.42
Bra008695.1-P	Field mustard	extracellular, golgi	44.75	20.42
Bra006303.1-P	Field mustard	extracellular, vacuole	44.75	20.42
Solyc03g115380.1.1	Tomato	nucleus, unclear	44.75	20.42
PGSC0003DMT400003666	Potato	extracellular, vacuole	44.75	20.37
KRH01262	Soybean	nucleus	44.29	20.21
AT1G26570.1	Thale cress	cytosol, extracellular	44.29	20.17
KRH75016	Soybean	endoplasmic reticulum	43.84	20.0
KRH70872	Soybean	endoplasmic reticulum	43.84	20.0
KRH44990	Soybean	nucleus	43.84	20.0
CDY37001	Canola	cytosol, vacuole	43.84	20.0
KRH18404	Soybean	endoplasmic reticulum	43.84	20.0
AT3G29360.1	Thale cress	cytosol, vacuole	43.84	20.0
KRH56847	Soybean	cytosol	43.38	19.87
KRH03109	Soybean	cytosol	43.38	19.83
Bra028234.1-P	Field mustard	extracellular, vacuole	43.38	19.79
Bra028430.1-P	Field mustard	cytosol, vacuole	43.38	19.79
CDX67427	Canola	cytosol, vacuole	43.38	19.79
KRG93627	Soybean	endoplasmic reticulum	43.38	19.79
AT5G39320.1	Thale cress	extracellular	42.92	19.58
Solyc02g067080.2.1	Tomato	extracellular	45.21	19.45
Os03t0147150-00	Rice	plasma membrane	21.46	19.26
KRH15845	Soybean	cytosol	27.4	18.13
CDX90989	Canola	cytosol, golgi	45.21	18.07
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	45.21	17.71
CDX78633	Canola	cytosol	44.75	17.31
KRG89491	Soybean	cytosol	22.83	16.95
Bra023520.1-P	Field mustard	golgi	45.21	15.94
CDX85549	Canola	cytosol	45.21	14.75
PGSC0003DMT400069038	Potato	cytosol	8.22	9.89
CDX85269	Canola	cytosol	5.94	5.91
Bra030352.1-P	Field mustard	extracellular	1.37	4.17
CDY15951	Canola	extracellular	1.37	4.17
AT3G01010.1	Thale cress	cytosol	1.83	2.53
Bra025395.1-P	Field mustard	cytosol	0.46	1.05
CDX86369	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.5.100	Gene3D:3.40.50.720	MapMan:35.1	InterPro:6-PGluconate_DH-like_C_sf	UniProt:A0A0P0WE11	ProteinID:BAS90656.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006024
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0016616
GO:GO:0016787	GO:GO:0019538	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:Os04g0581600	EnsemblPlants:Os04t0581600-01
PFAM:PF00984	PFAM:PF03721	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SUPFAM:SSF48179	InterPro:UDP-Glc/GDP-Man_DH_N
InterPro:UDP-Glc/GDP-Man_DH_dimer	UniParc:UPI0000DD9226	SEG:seg	:	:	:

Description

Similar to UDP-glucose dehydrogenase. (Os04t0581600-01)

Coordinates

chr4:+:29391121..29392720

Molecular Weight (calculated)

23629.4 Da

IEP (calculated)

11.838

GRAVY (calculated)

-0.317

Length

219 amino acids

Sequence
(BLAST)

001: REARRGVAAR RRGGAGKAAD LAYWESAARM IVDASRSGKV VVEKSTVPSG RPRPSRRSSR TTPMSSSSRC SPTRSSWRRS RPSLTCVLIG GRDTAAVQAL
101: KDMYAQWVPV DRIVTTNLWS AELSKLAVNA FLAQRVSSVN AISALCEATG ADITEVATGA AQRAQVQLRR ATASVGTARR RCGAPGERRQ LKRLQDLACM
201: CVHEVSEATW MVCARGIGQ

Best Arabidopsis Sequence Match ( AT1G26570.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A

Arabidopsis Description

UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.