Factsheet for GSMUA_Achr4P14320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
golgi 1
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P18750_001
GSMUA_Achr3P30310_001
GSMUA_Achr4P03270_001
GSMUA_Achr4P07270_001
GSMUA_Achr4P10820_001
GSMUA_Achr4P14320_001
GSMUA_Achr6P11090_001
GSMUA_Achr6P23920_001
GSMUA_Achr7P26580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	GSMUA_Achr10P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr11P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P18750_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P30310_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P03270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P07270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P10820_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P14320_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P11090_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P23920_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr7P26580_001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30310_001	Banana	cytosol	84.15	91.03
GSMUA_Achr4P03270_001	Banana	cytosol	83.17	90.45
GSMUA_Achr6P11090_001	Banana	cytosol	78.78	87.53
GSMUA_Achr6P23920_001	Banana	cytosol	68.78	86.24
GSMUA_Achr10P...	Banana	cytosol	79.02	86.17
GSMUA_Achr11P...	Banana	cytosol	80.73	85.97
GSMUA_Achr7P26580_001	Banana	cytosol	26.83	84.62
CDX69521	Canola	cytosol	75.12	83.47
EER95293	Sorghum	extracellular, vacuole	93.9	80.21
TraesCS4B01G116200.1	Wheat	extracellular, golgi	92.93	79.38
TraesCS4A01G199200.1	Wheat	extracellular, golgi	92.93	79.38
HORVU4Hr1G021270.1	Barley	extracellular, golgi	92.93	79.38
TraesCS4D01G113800.1	Wheat	extracellular, golgi	92.68	79.17
Solyc02g088690.2.1	Tomato	nucleus	60.0	77.85
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	71.22	77.66
Bra008695.1-P	Field mustard	extracellular, golgi	89.76	76.67
CDY26425	Canola	extracellular, golgi	89.51	76.46
PGSC0003DMT400064713	Potato	cytosol	86.34	76.29
AT5G15490.1	Thale cress	extracellular, vacuole	89.27	76.25
KRH18404	Soybean	endoplasmic reticulum	89.27	76.25
GSMUA_Achr3P18750_001	Banana	extracellular, golgi	66.83	76.11
Bra006303.1-P	Field mustard	extracellular, vacuole	89.02	76.04
KRG93627	Soybean	endoplasmic reticulum	89.02	76.04
KRH44990	Soybean	nucleus	88.78	75.83
KRH01262	Soybean	nucleus	88.78	75.83
PGSC0003DMT400003666	Potato	extracellular, vacuole	88.78	75.68
Os03t0425600-00	Rice	plasma membrane	88.54	75.47
PGSC0003DMT400069038	Potato	cytosol	33.41	75.27
PGSC0003DMT400087395	Potato	cytosol, golgi	88.05	75.21
AT3G29360.1	Thale cress	cytosol, vacuole	88.05	75.21
CDX67427	Canola	cytosol, vacuole	87.32	74.58
KRH70872	Soybean	endoplasmic reticulum	87.32	74.58
Solyc03g115380.1.1	Tomato	nucleus, unclear	87.32	74.58
Bra028430.1-P	Field mustard	cytosol, vacuole	87.32	74.58
CDY37001	Canola	cytosol, vacuole	87.32	74.58
KRH75016	Soybean	endoplasmic reticulum	87.07	74.38
Bra028234.1-P	Field mustard	extracellular, vacuole	86.83	74.17
Solyc06g069550.1.1	Tomato	extracellular	86.59	73.96
AT5G39320.1	Thale cress	extracellular	86.59	73.96
PGSC0003DMT400083187	Potato	extracellular	86.1	73.54
KRG89491	Soybean	cytosol	52.2	72.54
KRH15845	Soybean	cytosol	58.54	72.51
Solyc02g067080.2.1	Tomato	extracellular	89.51	72.1
Bra026264.1-P	Field mustard	extracellular, vacuole	42.93	71.26
CDX74475	Canola	extracellular	44.63	70.93
AT1G26570.1	Thale cress	cytosol, extracellular	83.17	70.89
Bra024708.1-P	Field mustard	cytosol, extracellular	82.68	70.48
CDY16166	Canola	cytosol	82.2	70.06
AT3G01010.1	Thale cress	cytosol	26.34	68.35
KRH03109	Soybean	cytosol	78.54	67.22
KRH56847	Soybean	cytosol	77.32	66.32
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	89.02	65.3
CDX90989	Canola	cytosol, golgi	87.07	65.15
CDX78633	Canola	cytosol	89.27	64.66
Bra023520.1-P	Field mustard	golgi	87.07	57.49
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	38.29	55.87
CDX85549	Canola	cytosol	87.32	53.35
CDX85269	Canola	cytosol	24.15	45.0
GSMUA_Achr4P10820_001	Banana	plasma membrane	68.05	37.55
Bra025395.1-P	Field mustard	cytosol	8.29	35.79
CDX86369	Canola	cytosol	7.8	34.78
Bra030352.1-P	Field mustard	extracellular	2.93	16.67
CDY15951	Canola	extracellular	2.93	16.67

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	Gene3D:1.20.5.100	MapMan:3.13.3.1	Gene3D:3.40.50.720
InterPro:6-PGluconate_DH-like_C_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr4G14320_001	EnsemblPlants:GSMUA_Achr4P14320_001	EnsemblPlants:GSMUA_Achr4T14320_001	UniProt:M0SNU7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984
PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500133	PANTHER:PTHR11374	PANTHER:PTHR11374:SF30
SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413	TIGRFAMs:TIGR03026	InterPro:UDP-Glc/GDP-Man
InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_euk	UniParc:UPI000295EE0C

Description

UDP-glucose 6-dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr4G14320_001]

Coordinates

chr4:-:10712201..10713845

Molecular Weight (calculated)

45377.6 Da

IEP (calculated)

7.918

GRAVY (calculated)

-0.117

Length

410 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YQCRGRNLFF STDIEKHVRE ADIIFVSVNT PTKTRGLGAG KAADLTYWES AARMIADVAK SDKIVVEKST VPVKTAEAIE KILTHNSKGI
101: RYQILSNPEF LAEGTAIQDL FNPDRVLIGG RETPEGRKAV QALKQVYANW VPEDRILTTN LWSAELSKLA ANAFLAQRIS SVNAISALCE ATGANVAEVA
201: YAVGKDSRIG PKFLNASVGF GGSCFQKDIL NLVYICECNG LPEVANYWKQ VIKINDYQKS RFVNRVVSSM FNTVAGKKIA VLGFAFKKDT GDTRETPAID
301: VCKGLLGDKA KISIYDPQVT EDQIQRDLAM NKFDWDHPAT KGAHGVCILT EWDEFRKLDF AKIYESMQKP AFIFDGRNVV DPEELREIGF IVYSIGKPLD
401: PWLKDMPAVV

Best Arabidopsis Sequence Match ( AT5G15490.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA

Arabidopsis Description

UGD3UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJW9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.