Factsheet for GSMUA_Achr3P18750_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P18750_001
GSMUA_Achr3P30310_001
GSMUA_Achr4P03270_001
GSMUA_Achr4P07270_001
GSMUA_Achr4P10820_001
GSMUA_Achr4P14320_001
GSMUA_Achr6P11090_001
GSMUA_Achr6P23920_001
GSMUA_Achr7P26580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39320.1	GSMUA_Achr10P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr11P...	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P18750_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr3P30310_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P03270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P07270_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P10820_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr4P14320_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P11090_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr6P23920_001	AT1G26570.1	21798944
AT5G39320.1	GSMUA_Achr7P26580_001	AT1G26570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23920_001	Banana	cytosol	77.78	85.63
GSMUA_Achr4P07270_001	Banana	extracellular, golgi	87.78	84.04
GSMUA_Achr7P26580_001	Banana	cytosol	29.44	81.54
Bra025395.1-P	Field mustard	cytosol	20.0	75.79
CDX86369	Canola	cytosol	18.89	73.91
GSMUA_Achr4P03270_001	Banana	cytosol	73.89	70.56
GSMUA_Achr3P30310_001	Banana	cytosol	74.17	70.45
GSMUA_Achr6P11090_001	Banana	cytosol	69.72	68.02
GSMUA_Achr11P...	Banana	cytosol	71.67	67.01
EER95293	Sorghum	extracellular, vacuole	89.17	66.88
GSMUA_Achr4P14320_001	Banana	cytosol	76.11	66.83
GSMUA_Achr10P...	Banana	cytosol	68.89	65.96
Solyc02g088690.2.1	Tomato	nucleus	56.94	64.87
HORVU4Hr1G021270.1	Barley	extracellular, golgi	86.11	64.58
TraesCS4A01G199200.1	Wheat	extracellular, golgi	86.11	64.58
TraesCS4B01G116200.1	Wheat	extracellular, golgi	86.11	64.58
TraesCS4D01G113800.1	Wheat	extracellular, golgi	85.83	64.38
Bra008695.1-P	Field mustard	extracellular, golgi	85.0	63.75
AT5G15490.1	Thale cress	extracellular, vacuole	85.0	63.75
Bra006303.1-P	Field mustard	extracellular, vacuole	84.72	63.54
CDY26425	Canola	extracellular, golgi	84.72	63.54
KRH70872	Soybean	endoplasmic reticulum	84.44	63.33
PGSC0003DMT400087395	Potato	cytosol, golgi	84.44	63.33
Os03t0425600-00	Rice	plasma membrane	84.44	63.2
PGSC0003DMT400003666	Potato	extracellular, vacuole	84.44	63.2
AT3G29360.1	Thale cress	cytosol, vacuole	84.17	63.12
KRH75016	Soybean	endoplasmic reticulum	84.17	63.12
Solyc03g115380.1.1	Tomato	nucleus, unclear	84.17	63.12
KRG93627	Soybean	endoplasmic reticulum	83.89	62.92
KRH44990	Soybean	nucleus	83.61	62.71
Solyc06g069550.1.1	Tomato	extracellular	83.61	62.71
KRH18404	Soybean	endoplasmic reticulum	83.61	62.71
KRH01262	Soybean	nucleus	83.61	62.71
PGSC0003DMT400083187	Potato	extracellular	82.5	61.88
CDX67427	Canola	cytosol, vacuole	82.22	61.67
CDY37001	Canola	cytosol, vacuole	82.22	61.67
Bra028430.1-P	Field mustard	cytosol, vacuole	82.22	61.67
Bra028234.1-P	Field mustard	extracellular, vacuole	82.22	61.67
PGSC0003DMT400064713	Potato	cytosol	79.44	61.64
PGSC0003DMT400069038	Potato	cytosol	31.11	61.54
AT5G39320.1	Thale cress	extracellular	81.94	61.46
AT1G26570.1	Thale cress	cytosol, extracellular	81.67	61.12
Bra024708.1-P	Field mustard	cytosol, extracellular	81.39	60.91
CDY16166	Canola	cytosol	81.11	60.71
Solyc02g067080.2.1	Tomato	extracellular	84.17	59.53
CDX74475	Canola	extracellular	41.39	57.75
AT3G01010.1	Thale cress	cytosol	25.28	57.59
KRH56847	Soybean	cytosol	76.39	57.53
KRH03109	Soybean	cytosol	76.39	57.41
Bra026264.1-P	Field mustard	extracellular, vacuole	38.89	56.68
CDX69521	Canola	cytosol	57.22	55.83
CDX70614	Canola	cytosol, mitochondrion, peroxisome, plastid	85.0	54.74
CDX90989	Canola	cytosol, golgi	82.78	54.38
CDX78633	Canola	cytosol	85.0	54.06
KRG89491	Soybean	cytosol	42.5	51.86
KRH15845	Soybean	cytosol	46.67	50.76
CDY15951	Canola	extracellular	9.72	48.61
Bra030352.1-P	Field mustard	extracellular	9.72	48.61
Bra023520.1-P	Field mustard	golgi	82.78	47.99
CDX85269	Canola	cytosol	28.89	47.27
Solyc03g065350.1.1	Tomato	cytosol, extracellular, peroxisome	36.11	46.26
CDX85549	Canola	cytosol	83.06	44.56
GSMUA_Achr4P10820_001	Banana	plasma membrane	84.17	40.78

Protein Annotations

KEGG:00040+1.1.1.22	KEGG:00053+1.1.1.22	KEGG:00520+1.1.1.22	MapMan:3.13.3.1	Gene3D:3.40.50.720	InterPro:6-PGluconate_DH-like_C_sf
GO:GO:0000166	GO:GO:0000271	GO:GO:0003674	GO:GO:0003824	GO:GO:0003979	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G18750_001	EnsemblPlants:GSMUA_Achr3P18750_001	EnsemblPlants:GSMUA_Achr3T18750_001	UniProt:M0SFU1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00984	PFAM:PF03720	PFAM:PF03721	PIRSF:PIRSF000124	PIRSF:PIRSF500134
PANTHER:PTHR11374	PANTHER:PTHR11374:SF30	SMART:SM00984	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52413
InterPro:UDP-Glc/GDP-Man	InterPro:UDP-Glc/GDP-Man_DH_C	InterPro:UDP-Glc/GDP-Man_DH_C_sf	InterPro:UDP-Glc/GDP-Man_DH_N	InterPro:UDP-Glc/GDP-Man_DH_dimer	InterPro:UDPglc_DH_bac
UniParc:UPI000294A21A	SEG:seg	:	:	:	:

Description

Probable UDP-glucose 6-dehydrogenase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18750_001]

Coordinates

chr3:+:20128949..20130496

Molecular Weight (calculated)

39470.8 Da

IEP (calculated)

7.590

GRAVY (calculated)

0.053

Length

360 amino acids

Sequence
(BLAST)

001: MVKICCIGAG YVGGPTMAVI ALKCPAVEVV VVDISVARIT AWNSEQLPIY EPGLDDVVKQ CRGRNLFFST DIEKHIARAD IIFVSVNTPT KTRGLGAGKA
101: ADLTYWENAA RMIADVAKAD KIILSNPEFL AEGTAIKDLF NPDRRISSVN AISALCEATG ADVAEVAYAI GKDTRVGPRF LSASVGFGGS CFQKDILNLV
201: YICECHGLPE VANYWKDVIK INDYQKSRFV NRVVSSMFNT VSEKKIAVLG FAFKKDTGDT RETPAIDVCK GLLGDKAKPV AVTRDAYEAT KGAHGVCILT
301: EWDEFKKLDY VRIYESMQKP AFMFDGRNVV DPQKMREIGF IVYSIGKPLD SWLVDRPAVV

Best Arabidopsis Sequence Match ( AT1G26570.1 )
(BLAST)

001: MVKICCIGAG YVGGPTMAVM ALKCPEIEVV VVDISEPRIN AWNSDRLPIY EPGLEDVVKQ CRGKNLFFST DVEKHVFESD IVFVSVNTPT KTQGLGAGKA
101: ADLTYWESAA RMIADVSKSS KIVVEKSTVP VRTAEAIEKI LTHNSKGIEF QILSNPEFLA EGTAIKDLYN PDRVLIGGRD TAAGQKAIKA LRDVYAHWVP
201: VEQIICTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GADVTQVAHA VGTDTRIGPK FLNASVGFGG SCFQKDILNL IYICECNGLP EAANYWKQVV
301: KVNDYQKIRF ANRVVSSMFN TVSGKKIAIL GFAFKKDTGD TRETPAIDVC NRLVADKAKL SIYDPQVLEE QIRRDLSMAR FDWDHPVPLQ QIKAEGISEQ
401: VNVVSDAYEA TKDAHGLCVL TEWDEFKSLD FKKIFDNMQK PAFVFDGRNV VDAVKLREIG FIVYSIGKPL DSWLKDMPAV A

Arabidopsis Description

UGD1UDP-glucose 6-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WCI2]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.