CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97778	Canola	extracellular	96.94	96.94
AT2G30933.1	Thale cress	extracellular	78.6	79.3
Bra021679.1-P	Field mustard	extracellular, plasma membrane, vacuole	100.0	75.83
CDX74636	Canola	extracellular	22.71	43.7
CDY47296	Canola	extracellular	22.71	43.7
CDY56715	Canola	cytosol	18.34	37.17
CDX90730	Canola	endoplasmic reticulum, extracellular	19.21	35.2
CDY05067	Canola	endoplasmic reticulum, extracellular	18.78	34.68
CDY72034	Canola	endoplasmic reticulum, extracellular	17.9	33.88
CDY48582	Canola	cytosol	20.96	33.8
CDY21992	Canola	cytosol	20.96	33.8
TraesCS1D01G428500.1	Wheat	cytosol, mitochondrion, peroxisome	29.69	31.34
CDY01142	Canola	extracellular	24.89	30.16
CDY19232	Canola	extracellular	24.02	29.26
CDY16115	Canola	extracellular	19.65	29.03
CDY47357	Canola	endoplasmic reticulum, extracellular	23.58	28.88
EES20007	Sorghum	extracellular, vacuole	31.0	28.74
CDY51213	Canola	extracellular	20.09	28.57
Zm00001d009686_P002	Maize	extracellular	30.57	28.57
CDY26741	Canola	extracellular	23.14	28.49
TraesCS1B01G451800.1	Wheat	endoplasmic reticulum, plasma membrane	32.75	28.2
HORVU1Hr1G091830.4	Barley	extracellular	32.31	28.03
TraesCS1A01G420600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.75	27.88
CDX83826	Canola	extracellular	22.27	27.72
CDX96707	Canola	extracellular	22.27	27.57
CDY02987	Canola	extracellular	19.21	27.33
CDY65205	Canola	plasma membrane	23.58	27.27
Os05t0581900-01	Rice	extracellular	33.19	27.05
CDY54140	Canola	extracellular	24.45	26.79
CDY34558	Canola	extracellular	20.09	26.74
CDY70929	Canola	extracellular	20.96	26.67
Zm00001d039139_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	30.13	26.64
CDY64750	Canola	endoplasmic reticulum, vacuole	34.93	26.58
CDY65418	Canola	cytosol	17.03	26.53
CDY40247	Canola	endoplasmic reticulum, extracellular, vacuole	22.71	26.53
CDX94970	Canola	plastid	34.06	26.35
CDX79873	Canola	endoplasmic reticulum, extracellular, plasma membrane	20.52	26.26
CDX96880	Canola	extracellular	19.65	26.16
CDY50312	Canola	extracellular	24.45	26.05
CDX98264	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.21	25.88
CDY43335	Canola	extracellular	33.19	25.76
CDY07353	Canola	extracellular	24.02	25.23
CDY04273	Canola	extracellular	24.02	25.23
CDY56240	Canola	extracellular	18.78	24.86
CDX90189	Canola	extracellular	34.06	24.84
CDX99818	Canola	extracellular	31.88	24.75
Os01t0631500-01	Rice	extracellular	30.13	24.73
CDY33795	Canola	extracellular	19.21	24.58
CDX98134	Canola	extracellular	20.09	24.08
CDY16114	Canola	extracellular	18.78	24.02
CDY48334	Canola	vacuole	32.31	23.57
CDY36415	Canola	extracellular	20.09	23.47
CDY40909	Canola	endoplasmic reticulum, extracellular, plasma membrane	24.02	23.21
CDX69983	Canola	extracellular	20.96	22.64
CDY16822	Canola	extracellular	19.65	22.61
CDX87201	Canola	extracellular	19.65	22.61
Zm00001d011431_P001	Maize	plasma membrane	30.13	22.33
EES01128	Sorghum	extracellular	30.13	22.26
CDY31085	Canola	plastid	33.62	21.94
CDY32184	Canola	vacuole	33.62	21.81
CDY23085	Canola	extracellular, plasma membrane, vacuole	18.34	21.76
TraesCS3A01G227300.1	Wheat	extracellular	31.44	21.62
CDX99038	Canola	extracellular	21.83	21.28
CDY42854	Canola	extracellular	17.9	21.03
TraesCS3B01G257100.1	Wheat	extracellular	31.0	20.82
CDY02169	Canola	extracellular	17.47	20.62
HORVU3Hr1G056800.1	Barley	extracellular	31.0	20.0
CDY56795	Canola	cytosol, nucleus, plastid, vacuole	22.27	16.29
CDY43577	Canola	vacuole	24.89	14.92
CDY37850	Canola	vacuole	24.45	14.74
CDX87377	Canola	endoplasmic reticulum, extracellular, vacuole	23.14	13.77
CDX88545	Canola	endoplasmic reticulum, extracellular, vacuole	23.14	13.62
CDY47016	Canola	extracellular	17.47	10.75

Protein Annotations

EnsemblPlants:CDY29629	EnsemblPlantsGene:GSBRNA2T00043381001	InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF118	PFAM:PF07983
ProteinID:CDY29629	ProteinID:CDY29629.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00768	UniParc:UPI0004EF042B
UniProt:A0A078GWW2	MapMan:35.1	:	:	:	:

Description

BnaA04g17980DBnaA04g17980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWW2]

Coordinates

chrLK032241:+:177..3604

Molecular Weight (calculated)

24162.4 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.014

Length

229 amino acids

Sequence
(BLAST)

001: MGKGFRIVTS LLLLFFVFPG AKASTQPIEE EKDITTPLAT NPTTSEPTVV PNSDSDASAV VTTPLTVPTP PRVAAHPGES WCVARENAPK IALQAALDYA
101: CGIGGADCSE IQEGGKCYNP NSLIAHASFA FNSYYQKNPI PSSCNFGGSA VTISGDPSVG SCHFPSTSTN ESTLNVSEDG LGLFGRIPSH PTPKPEASSS
201: SSRTFSHLYF HSHLLCFLFL YHVPVVVLG

Best Arabidopsis Sequence Match ( AT2G30933.1 )
(BLAST)

001: MDKGFRLVTS LLLLSFFFSG TKAITEPIEE EKDITTPLAT NPTTTPTTVV PNSDSDASAV ATTPLTIPSS PHGVAYPGDQ SWCVARENVA KMALQAALDY
101: ACGIGGADCS EIQEGGNCYN PNSLRAHASF AFNSYYQKNP IPSSCNFDGT AITISADPSL GSCHFPSTST SESILNVTSE DGLGLFGRIP SHPTPKPEAS
201: TSSSRTLISF LYFLCFCVLY PLVITLT

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1G3P4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.