Factsheet for VIT_14s0066g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0332g00160.t01
VIT_00s0396g00020.t01
VIT_00s0629g00020.t01
VIT_00s1311g00010.t01
VIT_01s0010g00360.t01
VIT_01s0010g03830.t01
VIT_01s0137g00010.t01
VIT_01s0150g00570.t01
VIT_02s0154g00330.t01
VIT_03s0063g02550.t01
VIT_04s0008g00830.t01
VIT_05s0020g02150.t01
VIT_05s0077g02340.t01
VIT_07s0005g04440.t01
VIT_07s0141g00240.t01
VIT_07s0151g00140.t01
VIT_07s0151g00490.t01
VIT_08s0007g07880.t01
VIT_08s0007g07900.t01
VIT_11s0016g04770.t01
VIT_11s0103g00270.t01
VIT_12s0035g01940.t01
VIT_12s0055g00700.t01
VIT_12s0121g00370.t01
VIT_13s0084g00610.t01
VIT_14s0171g00430.t01
VIT_15s0046g03680.t01
VIT_16s0039g02180.t01
VIT_16s0050g01490.t01
VIT_16s0100g01290.t01
VIT_17s0000g01240.t01
VIT_18s0001g00230.t01
VIT_18s0001g12730.t01
VIT_19s0027g00780.t01
VIT_19s0090g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14740.1	VIT_18s0001g12730.t01	AT1G19580.1	18189341
AT5G14740.1	VIT_11s0016g04770.t01	AT1G68680.1	18189341
AT5G14740.1	VIT_18s0001g00230.t01	AT1G76200.1	18189341
AT5G14740.1	VIT_03s0063g02550.t01	AT1G79010.1	18189341
AT5G14740.1	VIT_01s0137g00010.t01	AT2G02050.1	18189341
AT5G14740.1	VIT_12s0035g01940.t01	AT2G02510.1	18189341
AT5G14740.1	VIT_07s0005g04440.t01	AT2G20360.1	18189341
AT5G14740.1	VIT_12s0055g00700.t01	AT2G31490.1	18189341
AT5G14740.1	VIT_08s0007g07900.t01	AT2G42310.1	18189341
AT5G14740.1	VIT_05s0077g02340.t01	AT2G47690.1	18189341
AT5G14740.1	VIT_16s0039g02180.t01	AT3G03100.1	18189341
AT5G14740.1	VIT_05s0020g02150.t01	AT3G06310.1	18189341
AT5G14740.1	VIT_11s0103g00270.t01	AT3G08610.1	18189341
AT5G14740.1	VIT_13s0084g00610.t01	AT3G12260.1	18189341
AT5G14740.1	VIT_17s0000g01240.t01	AT3G48680.1	18189341
AT5G14740.1	VIT_08s0007g07880.t01	AT3G57790.1	18189341
AT5G14740.1	VIT_15s0046g03680.t01	AT4G00585.1	18189341
AT5G14740.1	VIT_16s0100g01290.t01	AT4G00585.1	18189341
AT5G14740.1	VIT_07s0141g00240.t01	AT4G02580.1	18189341
AT5G14740.1	VIT_19s0090g01760.t01	AT4G16450.1	18189341
AT5G14740.1	VIT_01s0010g00360.t01	AT4G20150.1	18189341
AT5G14740.1	VIT_01s0010g03830.t01	AT4G20150.1	18189341
AT5G14740.1	VIT_12s0121g00370.t01	AT5G08530.1	18189341
AT5G14740.1	VIT_19s0027g00780.t01	AT5G08530.1	18189341
AT5G14740.1	VIT_04s0008g00830.t01	AT5G11770.1	18189341
AT5G14740.1	VIT_14s0171g00430.t01	AT5G40770.1	18189341
AT5G14740.1	VIT_02s0154g00330.t01	AT5G47570.1	18189341
AT5G14740.1	VIT_01s0150g00570.t01	AT5G47890.1	18189341
AT5G14740.1	VIT_16s0050g01490.t01	AT5G52840.1	18189341
AT5G14740.1	VIT_00s1311g00010.t01	AT5G67590.1	18189341
AT5G14740.1	VIT_07s0151g00140.t01	AT5G67590.1	18189341
AT5G14740.1	VIT_07s0151g00490.t01	AT5G67590.1	18189341
AT5G14740.1	VIT_00s0332g00160.t01	ATMG00510.1	18189341
AT5G14740.1	VIT_00s0629g00020.t01	ATMG00580.1	18189341
AT5G14740.1	VIT_00s0396g00020.t01	ATMG01275.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85584	Canola	cytosol	56.72	73.36
Bra023485.1-P	Field mustard	cytosol	56.42	72.97
CDX91024	Canola	cytosol	56.42	72.97
KRH56601	Soybean	plastid	72.54	71.68
KRG93289	Soybean	nucleus, plastid	72.24	70.97
VIT_01s0127g00720.t01	Wine grape	cytosol	54.03	70.7
GSMUA_Achr3P31010_001	Banana	cytosol	41.79	69.65
AT3G01500.2	Thale cress	plastid	71.94	69.45
CDY28672	Canola	plastid	71.04	69.19
Bra040520.1-P	Field mustard	plastid	67.76	68.17
GSMUA_Achr7P26920_001	Banana	cytosol	40.3	67.16
Bra039113.1-P	Field mustard	plastid	66.57	66.77
CDY37516	Canola	plastid	66.57	64.64
GSMUA_Achr1P13950_001	Banana	cytosol	37.91	63.18
Zm00001d044095_P001	Maize	extracellular	37.01	62.0
KXG32976	Sorghum	cytosol	36.12	59.9
AT5G14740.1	Thale cress	plastid	59.1	59.82
VIT_17s0000g08450.t01	Wine grape	cytosol	45.97	59.46
TraesCS7B01G354800.1	Wheat	cytosol	35.82	59.41
KXG32973	Sorghum	cytosol	36.12	59.31
TraesCS7D01G443400.1	Wheat	cytosol	35.52	58.91
TraesCS7D01G443500.1	Wheat	cytosol	34.33	58.08
VIT_17s0000g08460.t01	Wine grape	cytosol	45.07	57.85
GSMUA_Achr4P14900_001	Banana	plastid	42.99	54.14
VIT_11s0065g00100.t01	Wine grape	cytosol	31.04	53.89
CDY49059	Canola	plastid	60.3	53.02
GSMUA_Achr9P07050_001	Banana	plastid	41.19	52.87
Zm00001d011454_P001	Maize	plastid	38.51	52.65
GSMUA_Achr6P27350_001	Banana	plasma membrane, plastid	41.79	51.66
HORVU3Hr1G057090.2	Barley	plastid	40.0	51.15
Zm00001d044096_P001	Maize	cytosol	36.12	50.63
TraesCS3D01G223300.1	Wheat	plastid	38.51	50.0
TraesCS3A01G230000.2	Wheat	plastid	38.51	49.81
TraesCS7A01G454500.1	Wheat	cytosol	31.64	49.77
TraesCS3B01G259300.1	Wheat	golgi, plastid	38.21	49.61
TraesCS3B01G259400.1	Wheat	cytosol, plastid	37.01	49.6
TraesCS3A01G230100.1	Wheat	cytosol, plastid	37.01	49.6
TraesCS7B01G354900.1	Wheat	plastid	36.12	49.59
TraesCS3D01G223200.1	Wheat	cytosol, plastid	36.72	49.2
HORVU3Hr1G056990.2	Barley	cytosol, plastid	36.72	49.2
TraesCS7A01G454400.1	Wheat	plastid	34.93	48.95
TraesCS7A01G454300.1	Wheat	extracellular, plastid	35.22	47.97
KXG32978	Sorghum	cytosol, extracellular, plastid	35.52	46.48
Os01t0639900-01	Rice	extracellular, nucleus	37.61	46.32
Os01t0640000-00	Rice	plastid	28.96	40.93
VIT_17s0000g08470.t01	Wine grape	plastid	20.3	40.24
VIT_18s0001g07400.t01	Wine grape	plastid	34.63	37.06
VIT_03s0017g00270.t01	Wine grape	plastid	33.13	36.88
HORVU7Hr1G103870.12	Barley	cytosol, plastid	35.52	32.43
Zm00001d044099_P002	Maize	plastid	39.7	29.42
KXG32970	Sorghum	cytosol	38.51	28.79

Protein Annotations

KEGG:00910+4.2.1.1	EntrezGene:100249137	wikigene:100249137	Gene3D:3.40.1050.10	MapMan:35.1	EMBL:AM467689
ProteinID:CAN61667	ProteinID:CAN61667.1	ProteinID:CBI34917	ProteinID:CBI34917.3	InterPro:Carbonic_anhydrase	InterPro:Carbonic_anhydrase_CS
InterPro:Carbonic_anhydrase_sf	UniProt:D7TWP2	EMBL:FN596252	GO:GO:0003674	GO:GO:0003824	GO:GO:0004089
GO:GO:0005488	GO:GO:0008150	GO:GO:0008270	GO:GO:0015976	GO:GO:0016829	InterPro:IPR036874
EntrezGene:LOC100249137	wikigene:LOC100249137	PFAM:PF00484	ScanProsite:PS00704	ScanProsite:PS00705	PANTHER:PTHR11002
PANTHER:PTHR11002:SF27	SMART:SM00947	SUPFAM:SSF53056	UniParc:UPI0001984C25	ArrayExpress:VIT_14s0066g01210	EnsemblPlantsGene:VIT_14s0066g01210
EnsemblPlants:VIT_14s0066g01210.t01	unigene:Vvi.3796	RefSeq:XP_002277957	RefSeq:XP_002277957.1	:	:

Description

Carbonic anhydrase [Source:UniProtKB/TrEMBL;Acc:D7TWP2]

Coordinates

chr14:+:27702721..27707102

Molecular Weight (calculated)

36546.8 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.116

Length

335 amino acids

Sequence
(BLAST)

001: MSTATINSWC LTSLSQAQSP QNKATLRPSI SARLNSPASP APPNLIQNKP VFAAPAPIIT PTWREDMGNG SYDEAVEGLR KLLREKANLE PVAAAKIDQI
101: TAQLKSSDGS SSPFDPVERM KTGFIYFKKE KYDKNPALHA ELAKGQSPKF MVFACSDSRV CPSHVLDFQP GDAFVVRNVA NMVPAYDKIR YSGVGSAVEY
201: AVLHLKVEHI VVIGHSSCGG IKGLMSFPFD GTSSTDFIED WVKIGLPAKS KVVAECGDLP FPEQCAYCEK EAVNVSLGNL LSYPFVREGL VKKTLTLKGG
301: YYDFVKGTFE LWGLDFGLSP SFSVKDVATI LHWKL

Best Arabidopsis Sequence Match ( AT3G01500.2 )
(BLAST)

001: MSTAPLSGFF LTSLSPSQSS LQKLSLRTSS TVACLPPASS SSSSSSSSSS RSVPTLIRNE PVFAAPAPII APYWSEEMGT EAYDEAIEAL KKLLIEKEEL
101: KTVAAAKVEQ ITAALQTGTS SDKKAFDPVE TIKQGFIKFK KEKYETNPAL YGELAKGQSP KYMVFACSDS RVCPSHVLDF QPGDAFVVRN IANMVPPFDK
201: VKYGGVGAAI EYAVLHLKVE NIVVIGHSAC GGIKGLMSFP LDGNNSTDFI EDWVKICLPA KSKVISELGD SAFEDQCGRC EREAVNVSLA NLLTYPFVRE
301: GLVKGTLALK GGYYDFVKGA FELWGLEFGL SETSSVKDVA TILHWKL

Arabidopsis Description

BCA1Beta carbonic anhydrase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27140]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.