CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG62078
KRG88442
KRG90692
KRG95330
KRG96447
KRH00516
KRH00688
KRH01881
KRH04108
KRH04413
KRH09710
KRH10832
KRH11550
KRH12694
KRH12696
KRH13331
KRH15514
KRH15676
KRH16100
KRH19632
KRH20678
KRH21490
KRH22328
KRH23599
KRH24002
KRH24165
KRH26997
KRH27732
KRH29130
KRH29315
KRH31690
KRH33026
KRH36573
KRH37810
KRH38334
KRH39037
KRH40506
KRH40639
KRH41125
KRH42439
KRH44804
KRH45920
KRH49068
KRH51833
KRH52179
KRH54446
KRH55684
KRH56323
KRH56645
KRH57381
KRH58129
KRH58545
KRH59820
KRH60378
KRH61144
KRH61146
KRH61494
KRH62783
KRH63471
KRH65238
KRH68191
KRH69090
KRH71875
KRH72219
KRH76174
KRH76302
KRH77692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14740.1	KRH51833	AT1G19580.1	18189341
AT5G14740.1	KRH61144	AT1G19580.1	18189341
AT5G14740.1	KRH61146	AT1G19580.1	18189341
AT5G14740.1	KRH56645	AT1G68680.1	18189341
AT5G14740.1	KRH24165	AT1G76200.1	18189341
AT5G14740.1	KRH29130	AT1G76200.1	18189341
AT5G14740.1	KRH10832	AT1G79010.1	18189341
AT5G14740.1	KRH21490	AT1G79010.1	18189341
AT5G14740.1	KRH60378	AT1G79010.1	18189341
AT5G14740.1	KRG90692	AT2G02050.1	18189341
AT5G14740.1	KRH16100	AT2G02050.1	18189341
AT5G14740.1	KRH01881	AT2G02510.1	18189341
AT5G14740.1	KRH19632	AT2G20360.1	18189341
AT5G14740.1	KRH49068	AT2G31490.1	18189341
AT5G14740.1	KRH33026	AT2G42310.1	18189341
AT5G14740.1	KRH71875	AT2G42310.1	18189341
AT5G14740.1	KRG96447	AT2G47690.1	18189341
AT5G14740.1	KRH68191	AT2G47690.1	18189341
AT5G14740.1	KRH27732	AT3G03100.1	18189341
AT5G14740.1	KRH77692	AT3G03100.1	18189341
AT5G14740.1	KRH65238	AT3G06310.1	18189341
AT5G14740.1	KRH76302	AT3G06310.1	18189341
AT5G14740.1	KRH00516	AT3G08610.1	18189341
AT5G14740.1	KRH40639	AT3G08610.1	18189341
AT5G14740.1	KRH13331	AT3G12260.1	18189341
AT5G14740.1	KRH20678	AT3G12260.1	18189341
AT5G14740.1	KRH37810	AT3G12260.1	18189341
AT5G14740.1	KRH41125	AT3G48680.1	18189341
AT5G14740.1	KRH59820	AT3G48680.1	18189341
AT5G14740.1	KRG95330	AT3G57790.1	18189341
AT5G14740.1	KRH00688	AT4G00585.1	18189341
AT5G14740.1	KRH40506	AT4G00585.1	18189341
AT5G14740.1	KRH09710	AT4G02580.1	18189341
AT5G14740.1	KRH23599	AT4G02580.1	18189341
AT5G14740.1	KRH11550	AT4G16450.1	18189341
AT5G14740.1	KRH36573	AT4G16450.1	18189341
AT5G14740.1	KRH42439	AT4G20150.1	18189341
AT5G14740.1	KRH58545	AT4G20150.1	18189341
AT5G14740.1	KRH22328	AT4G28510.1	18189341
AT5G14740.1	KRH24002	AT4G28510.1	18189341
AT5G14740.1	KRH26997	AT4G28510.1	18189341
AT5G14740.1	KRH29315	AT4G28510.1	18189341
AT5G14740.1	KRH39037	AT4G28510.1	18189341
AT5G14740.1	KRH31690	AT5G08530.1	18189341
AT5G14740.1	KRH69090	AT5G08530.1	18189341
AT5G14740.1	KRH15514	AT5G11770.1	18189341
AT5G14740.1	KRH52179	AT5G11770.1	18189341
AT5G14740.1	KRH61494	AT5G11770.1	18189341
AT5G14740.1	KRH44804	AT5G40770.1	18189341
AT5G14740.1	KRH56323	AT5G40770.1	18189341
AT5G14740.1	KRH62783	AT5G40770.1	18189341
AT5G14740.1	KRH22328	AT5G44140.1	18189341
AT5G14740.1	KRH24002	AT5G44140.1	18189341
AT5G14740.1	KRH26997	AT5G44140.1	18189341
AT5G14740.1	KRH29315	AT5G44140.1	18189341
AT5G14740.1	KRH39037	AT5G44140.1	18189341
AT5G14740.1	KRH04108	AT5G47570.1	18189341
AT5G14740.1	KRH57381	AT5G47570.1	18189341
AT5G14740.1	KRH54446	AT5G47890.1	18189341
AT5G14740.1	KRH55684	AT5G47890.1	18189341
AT5G14740.1	KRH63471	AT5G47890.1	18189341
AT5G14740.1	KRH72219	AT5G47890.1	18189341
AT5G14740.1	KRH38334	AT5G52840.1	18189341
AT5G14740.1	KRH04413	AT5G67590.1	18189341
AT5G14740.1	KRH58129	AT5G67590.1	18189341
AT5G14740.1	KRH45920	ATMG00270.1	18189341
AT5G14740.1	KRH76174	ATMG00285.1	18189341
AT5G14740.1	KRH15676	ATMG00510.1	18189341
AT5G14740.1	KRG88442	ATMG00513.1	18189341
AT5G14740.1	KRH12694	ATMG00513.1	18189341
AT5G14740.1	KRH12696	ATMG00513.1	18189341
AT5G14740.1	KRG62078	ATMG00580.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56601	Soybean	plastid	97.65	98.23
VIT_14s0066g01210.t01	Wine grape	plastid	70.97	72.24
Bra023485.1-P	Field mustard	cytosol	53.08	69.88
CDX91024	Canola	cytosol	53.08	69.88
CDX85584	Canola	cytosol	52.79	69.5
CDY28672	Canola	plastid	68.04	67.44
AT3G01500.2	Thale cress	plastid	68.62	67.44
KRG99341	Soybean	nucleus	47.51	67.22
GSMUA_Achr3P31010_001	Banana	cytosol	39.59	67.16
KRH45667	Soybean	nucleus	50.44	66.41
Bra040520.1-P	Field mustard	plastid	64.81	66.37
Bra039113.1-P	Field mustard	plastid	64.81	66.17
KRH74596	Soybean	nucleus	52.49	64.39
CDY37516	Canola	plastid	64.52	63.77
GSMUA_Achr7P26920_001	Banana	cytosol	37.54	63.68
KRH69565	Soybean	nucleus	51.91	63.67
GSMUA_Achr1P13950_001	Banana	cytosol	36.66	62.19
KXG32976	Sorghum	cytosol	35.48	59.9
Zm00001d044095_P001	Maize	extracellular	34.9	59.5
KXG32973	Sorghum	cytosol	34.9	58.33
AT5G14740.1	Thale cress	plastid	55.72	57.4
TraesCS7D01G443500.1	Wheat	cytosol	32.26	55.56
TraesCS7B01G354800.1	Wheat	cytosol	32.84	55.45
TraesCS7D01G443400.1	Wheat	cytosol	32.55	54.95
KRH54402	Soybean	cytosol	41.35	54.02
CDY49059	Canola	plastid	59.24	53.02
GSMUA_Achr4P14900_001	Banana	plastid	41.06	52.63
GSMUA_Achr9P07050_001	Banana	plastid	39.0	50.96
GSMUA_Achr6P27350_001	Banana	plasma membrane, plastid	40.18	50.55
Zm00001d011454_P001	Maize	plastid	36.07	50.2
Zm00001d044096_P001	Maize	cytosol	34.31	48.95
TraesCS7A01G454500.1	Wheat	cytosol	30.5	48.83
HORVU3Hr1G057090.2	Barley	plastid	36.66	47.71
TraesCS3D01G223300.1	Wheat	plastid	35.78	47.29
TraesCS3A01G230000.2	Wheat	plastid	35.78	47.1
TraesCS3B01G259300.1	Wheat	golgi, plastid	35.48	46.9
KXG32978	Sorghum	cytosol, extracellular, plastid	35.19	46.88
TraesCS7A01G454400.1	Wheat	plastid	31.96	45.61
TraesCS3A01G230100.1	Wheat	cytosol, plastid	33.43	45.6
TraesCS7B01G354900.1	Wheat	plastid	32.55	45.49
TraesCS3B01G259400.1	Wheat	cytosol, plastid	32.84	44.8
HORVU3Hr1G056990.2	Barley	cytosol, plastid	32.84	44.8
TraesCS3D01G223200.1	Wheat	cytosol, plastid	32.55	44.4
TraesCS7A01G454300.1	Wheat	extracellular, plastid	31.96	44.31
Os01t0639900-01	Rice	extracellular, nucleus	34.9	43.75
KRH21767	Soybean	plastid	32.84	37.21
Os01t0640000-00	Rice	plastid	25.81	37.13
KRH10599	Soybean	plastid	32.84	37.09
HORVU7Hr1G103870.12	Barley	cytosol, plastid	33.43	31.06
KRH72455	Soybean	mitochondrion	28.45	30.41
KXG32970	Sorghum	cytosol	36.36	27.68
Zm00001d044099_P002	Maize	plastid	36.66	27.65
KRH16842	Soybean	mitochondrion, plastid	17.01	26.48

Protein Annotations

KEGG:00910+4.2.1.1	EntrezGene:100781868	Gene3D:3.40.1050.10	MapMan:35.1	EMBL:ACUP02011547	InterPro:Carbonic_anhydrase
InterPro:Carbonic_anhydrase_CS	InterPro:Carbonic_anhydrase_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G007700	GO:GO:0003674	GO:GO:0003824
GO:GO:0004089	GO:GO:0005488	GO:GO:0008150	GO:GO:0008270	GO:GO:0015976	GO:GO:0016829
UniProt:I1N5Q1	InterPro:IPR036874	EnsemblPlants:KRG93289	ProteinID:KRG93289	ProteinID:KRG93289.1	PFAM:PF00484
ScanProsite:PS00704	ScanProsite:PS00705	PANTHER:PTHR11002	PANTHER:PTHR11002:SF27	MetaCyc:PWY-241	MetaCyc:PWY-5743
MetaCyc:PWY-5744	MetaCyc:PWY-5789	MetaCyc:PWY-6142	MetaCyc:PWY-7115	MetaCyc:PWY-7117	SMART:SM00947
SUPFAM:SSF53056	UniParc:UPI000233F009	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:774837..781805

Molecular Weight (calculated)

36751.8 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.080

Length

341 amino acids

Sequence
(BLAST)

001: MSTSSINGWC LSSISPAKTS LKKATLGPSV FATVSTPSSP SSSSSSSFPS LIQDRPVFAA PAPIITPTVR EDMAKEYEQA IEELQKLLRE KSELKATAAE
101: KVEQITASLG TSSSDGIPSS EASDRIKAGF IHFKKEKYDK NPALYGELAK GQSPKFMVFA CSDSRVCPSH VLDFQPGEAF VVRNVANIVP PYDQSKYAGT
201: GAAVEYAVLH LKVSEIVVIG HSACGGIKGL LSFPYDGTYS TDFIEEWVKI GLPAKAKVKT QHGDAPFAEL CSHCEKEAVN VSLGNLLTYP FVRDGLVNKT
301: LSLKGGYYDF VKGSFELWGL QFGLASSFSV KDVATILHWK L

Best Arabidopsis Sequence Match ( AT3G01500.2 )
(BLAST)

001: MSTAPLSGFF LTSLSPSQSS LQKLSLRTSS TVACLPPASS SSSSSSSSSS RSVPTLIRNE PVFAAPAPII APYWSEEMGT EAYDEAIEAL KKLLIEKEEL
101: KTVAAAKVEQ ITAALQTGTS SDKKAFDPVE TIKQGFIKFK KEKYETNPAL YGELAKGQSP KYMVFACSDS RVCPSHVLDF QPGDAFVVRN IANMVPPFDK
201: VKYGGVGAAI EYAVLHLKVE NIVVIGHSAC GGIKGLMSFP LDGNNSTDFI EDWVKICLPA KSKVISELGD SAFEDQCGRC EREAVNVSLA NLLTYPFVRE
301: GLVKGTLALK GGYYDFVKGA FELWGLEFGL SETSSVKDVA TILHWKL

Arabidopsis Description

BCA1Beta carbonic anhydrase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27140]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.