CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

plastid 3
extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71001
CDX79965	endoplasmic reticulum
CDX79993
CDX81995
CDX83400
CDX84829	endoplasmic reticulum
CDX84830	endoplasmic reticulum
CDX88793
CDX92349
CDX95631
CDX96233
CDX97826	endoplasmic reticulum
CDX97827	endoplasmic reticulum
CDY00522
CDY02068	endoplasmic reticulum
CDY04155
CDY05880
CDY06955	endoplasmic reticulum
CDY08353
CDY09141
CDY10741	endoplasmic reticulum
CDY13846
CDY14370
CDY14751	endoplasmic reticulum
CDY20247
CDY21085
CDY22488	endoplasmic reticulum
CDY23876	endoplasmic reticulum
CDY23995	endoplasmic reticulum
CDY23996	endoplasmic reticulum
CDY25557
CDY26931
CDY27392
CDY28830
CDY29670	endoplasmic reticulum
CDY29671	endoplasmic reticulum
CDY34396
CDY34589
CDY35432	endoplasmic reticulum
CDY35686
CDY37029
CDY38194
CDY42012
CDY45557
CDY51340
CDY56247
CDY57247
CDY61583
CDY65417
CDY68104
CDY71101
CDY71885

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40890.1	CDY51340	AT1G20330.1	23175744
AT2G40890.1	CDY71885	AT1G20330.1	23175744
AT2G40890.1	CDY08353	AT1G64090.2	23175744
AT2G40890.1	CDY25557	AT1G64090.2	23175744
AT2G40890.1	CDY34396	AT1G64090.2	23175744
AT2G40890.1	CDY38194	AT1G64090.2	23175744
AT2G40890.1	CDY04155	AT2G03510.1	23175744
AT2G40890.1	CDY45557	AT2G03510.1	23175744
AT2G40890.1	CDY65417	AT2G03510.1	23175744
AT2G40890.1	CDX81995	AT2G20990.3	23175744
AT2G40890.1	CDY13846	AT2G20990.3	23175744
AT2G40890.1	CDX84829	AT2G30490.1	23175744
AT2G40890.1	CDX84830	AT2G30490.1	23175744
AT2G40890.1	CDX97826	AT2G30490.1	23175744
AT2G40890.1	CDX97827	AT2G30490.1	23175744
AT2G40890.1	CDY02068	AT2G30490.1	23175744
AT2G40890.1	CDY10741	AT2G30490.1	23175744
AT2G40890.1	CDY23995	AT2G30490.1	23175744
AT2G40890.1	CDY23996	AT2G30490.1	23175744
AT2G40890.1	CDY29670	AT2G30490.1	23175744
AT2G40890.1	CDY29671	AT2G30490.1	23175744
AT2G40890.1	CDX84829	AT2G30490.1	23175744
AT2G40890.1	CDX84830	AT2G30490.1	23175744
AT2G40890.1	CDX97826	AT2G30490.1	23175744
AT2G40890.1	CDX97827	AT2G30490.1	23175744
AT2G40890.1	CDY02068	AT2G30490.1	23175744
AT2G40890.1	CDY10741	AT2G30490.1	23175744
AT2G40890.1	CDY23995	AT2G30490.1	23175744
AT2G40890.1	CDY23996	AT2G30490.1	23175744
AT2G40890.1	CDY29670	AT2G30490.1	23175744
AT2G40890.1	CDY29671	AT2G30490.1	23175744
AT2G40890.1	CDX79965	AT2G40890.1	23175744
AT2G40890.1	CDY06955	AT2G40890.1	23175744
AT2G40890.1	CDY14751	AT2G40890.1	23175744
AT2G40890.1	CDY22488	AT2G40890.1	23175744
AT2G40890.1	CDY23876	AT2G40890.1	23175744
AT2G40890.1	CDY35432	AT2G40890.1	23175744
AT2G40890.1	CDX83400	AT2G45140.1	23175744
AT2G40890.1	CDX95631	AT2G45140.1	23175744
AT2G40890.1	CDY27392	AT2G45140.1	23175744
AT2G40890.1	CDY37029	AT2G45140.1	23175744
AT2G40890.1	CDY56247	AT2G45140.1	23175744
AT2G40890.1	CDY57247	AT2G45140.1	23175744
AT2G40890.1	CDX79993	AT2G46170.1	23175744
AT2G40890.1	CDY42012	AT2G46170.1	23175744
AT2G40890.1	CDY21085	AT3G26830.1	23175744
AT2G40890.1	CDY34589	AT3G26830.1	23175744
AT2G40890.1	CDY05880	AT3G48890.1	23175744
AT2G40890.1	CDY71101	AT3G48890.1	23175744
AT2G40890.1	CDX71001	AT5G22460.1	23175744
AT2G40890.1	CDX88793	AT5G22460.1	23175744
AT2G40890.1	CDX92349	AT5G22460.1	23175744
AT2G40890.1	CDY09141	AT5G22460.1	23175744
AT2G40890.1	CDY26931	AT5G22460.1	23175744
AT2G40890.1	CDY35686	AT5G22460.1	23175744
AT2G40890.1	CDY68104	AT5G22460.1	23175744
AT2G40890.1	CDY00522	AT5G52240.1	23175744
AT2G40890.1	CDY61583	AT5G52240.1	23175744
AT2G40890.1	CDX96233	AT5G53560.1	23175744
AT2G40890.1	CDY14370	AT5G53560.1	23175744
AT2G40890.1	CDY20247	AT5G53560.1	23175744
AT2G40890.1	CDY28830	AT5G53560.1	23175744

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79965	Canola	endoplasmic reticulum, extracellular, vacuole	95.07	95.07
CDY14751	Canola	endoplasmic reticulum	89.15	88.98
AT2G40890.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	88.76	88.58
CDY06955	Canola	endoplasmic reticulum	88.56	88.39
CDY35432	Canola	endoplasmic reticulum, extracellular, vacuole	88.17	87.99
CDY22488	Canola	cytosol, mitochondrion	58.97	84.46
KRH66683	Soybean	extracellular, golgi	75.35	75.05
KRG95042	Soybean	mitochondrion	74.75	74.46
VIT_08s0040g00780.t01	Wine grape	extracellular, golgi	74.56	74.41
Solyc10g078240.1.1	Tomato	endoplasmic reticulum, extracellular	68.64	68.37
GSMUA_Achr8P24010_001	Banana	endoplasmic reticulum, extracellular	64.69	68.33
PGSC0003DMT400018493	Potato	endoplasmic reticulum, extracellular	68.24	68.11
Zm00001d038555_P001	Maize	plasma membrane	65.88	65.23
EES18431	Sorghum	endoplasmic reticulum	65.88	65.23
Zm00001d043174_P001	Maize	mitochondrion	65.68	64.91
TraesCS1A01G310500.1	Wheat	golgi	65.29	64.65
PGSC0003DMT400075164	Potato	cytosol	57.4	64.52
TraesCS1B01G321800.1	Wheat	endoplasmic reticulum	65.09	64.45
HORVU0Hr1G031710.1	Barley	endoplasmic reticulum	65.29	64.4
HORVU1Hr1G068030.1	Barley	endoplasmic reticulum	65.29	64.4
EES03767	Sorghum	endoplasmic reticulum, extracellular	65.09	64.33
TraesCS1D01G310000.1	Wheat	endoplasmic reticulum	64.89	64.26
HORVU3Hr1G078660.1	Barley	endoplasmic reticulum, extracellular	64.5	64.24
TraesCS3B01G361900.1	Wheat	endoplasmic reticulum	64.3	64.05
TraesCS3D01G325300.1	Wheat	endoplasmic reticulum	64.1	63.85
Os05t0494000-01	Rice	plasma membrane	64.3	63.67
TraesCS3A01G331800.1	Wheat	endoplasmic reticulum	63.71	63.46
Os10t0196100-00	Rice	mitochondrion	29.98	63.33
TraesCS5A01G554000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	63.12	62.75
PGSC0003DMT400018494	Potato	endoplasmic reticulum, extracellular	62.92	62.67
Solyc10g078230.1.1	Tomato	endoplasmic reticulum, extracellular	62.72	62.48
PGSC0003DMT400038205	Potato	extracellular, golgi	61.74	61.74
PGSC0003DMT400038202	Potato	extracellular, golgi	61.34	61.34
Solyc10g078220.1.1	Tomato	endoplasmic reticulum	61.14	61.26
Solyc01g009370.1.1	Tomato	extracellular, golgi	60.95	60.95
PGSC0003DMT400018497	Potato	endoplasmic reticulum, golgi	52.86	60.22
TraesCSU01G032400.1	Wheat	endoplasmic reticulum	30.97	58.15
TraesCS4B01G393700.1	Wheat	extracellular, golgi	54.04	57.81
TraesCSU01G032500.1	Wheat	cytosol, plasma membrane, plastid	59.96	56.51
PGSC0003DMT400018498	Potato	endoplasmic reticulum, golgi	33.14	54.19
GSMUA_Achr4P10110_001	Banana	endoplasmic reticulum, golgi	39.25	51.96
CDX85843	Canola	endoplasmic reticulum	45.76	46.59
CDX68176	Canola	endoplasmic reticulum	45.56	46.39
CDY15188	Canola	cytosol	32.35	35.73
CDX90022	Canola	cytosol	32.54	35.41
CDX69984	Canola	extracellular, golgi	34.71	34.44
CDY38002	Canola	cytosol	27.22	32.94
CDX99037	Canola	endoplasmic reticulum, extracellular	34.91	24.69

Protein Annotations

Gene3D:1.10.630.10	MapMan:21.6.1.2	GO:A0A078GER0	UniProt:A0A078GER0	EnsemblPlants:CDY23876	ProteinID:CDY23876
ProteinID:CDY23876.1	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00024310001	InterPro:IPR036396	PFAM:PF00067	PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086
PANTHER:PTHR24298	PANTHER:PTHR24298:SF0	SUPFAM:SSF48264	UniParc:UPI0004EDCD16	SEG:seg	:

Description

BnaC04g01610DBnaC04g01610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GER0]

Coordinates

chrLK032150:+:442535..446866

Molecular Weight (calculated)

57591.1 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.130

Length

507 amino acids

Sequence
(BLAST)

001: MSWFLITAAI AAVVSYKLIQ RLRFKLPPGP LPKPIIGNLC DIKHVRFICY YEWAQTYGPI ISVWIGSILN VVVSSAELAK EVLKDHDQKL ADRHRNRSTE
101: AFSRNGQDLI WADYGPHYVK VRKVCMLELF TPKRLESLRP IREDEVNAMV ESVFRDCKLP ENINKGIQLR KYLGAVAFNN ITRLVFGKRF VDADGVMDEQ
201: GLEFHAIVSN GLKLGASLSI AEHIPWLRWM CPADEKAFAE HGARRDLLTR AIMEEHTLVR QKSSGPKQHF VDALLTLKDQ YDLSEDIIIG LLWDMITAGM
301: DTAAITTEWA MAEMIKNPRV QQKVQEEFDR VISHDRVLTE ADFASLPYLK CVVKETFRLH PPTPLMVPHR ARADVKIGGF NIPKGSNVHV NVWAVGRDPA
401: VWKTPLEFRP ERFLEEDVDM KGHDFRLLPF GAGRRFCPGA QLGISLVTSM LSHLLHHFVW TLPQGTKPED IDMSGNPGIV TFMRTPVQAV ATPRLASDLY
501: KHVPFDM

Best Arabidopsis Sequence Match ( AT2G40890.1 )
(BLAST)

001: MSWFLIAVAT IAAVVSYKLI QRLRYKFPPG PSPKPIVGNL YDIKPVRFRC YYEWAQSYGP IISVWIGSIL NVVVSSAELA KEVLKEHDQK LADRHRNRST
101: EAFSRNGQDL IWADYGPHYV KVRKVCTLEL FTPKRLESLR PIREDEVTAM VESVFRDCNL PENRAKGLQL RKYLGAVAFN NITRLAFGKR FMNAEGVVDE
201: QGLEFKAIVS NGLKLGASLS IAEHIPWLRW MFPADEKAFA EHGARRDRLT RAIMEEHTLA RQKSSGAKQH FVDALLTLKD QYDLSEDTII GLLWDMITAG
301: MDTTAITAEW AMAEMIKNPR VQQKVQEEFD RVVGLDRILT EADFSRLPYL QCVVKESFRL HPPTPLMLPH RSNADVKIGG YDIPKGSNVH VNVWAVARDP
401: AVWKNPFEFR PERFLEEDVD MKGHDFRLLP FGAGRRVCPG AQLGINLVTS MMSHLLHHFV WTPPQGTKPE EIDMSENPGL VTYMRTPVQA VATPRLPSDL
501: YKRVPYDM

Arabidopsis Description

CYP98A3Cytochrome P450 98A3 [Source:UniProtKB/Swiss-Prot;Acc:O22203]
SUBAcon: [extracellular,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.